Wall clock time and date at job start Mon Mar 30 2020 20:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46768 * 2 1 4 4 C 1.50699 * 109.47373 * 240.00104 * 2 1 3 5 5 H 1.07999 * 119.99613 * 240.00365 * 4 2 1 6 6 C 1.37875 * 120.00085 * 59.99413 * 4 2 1 7 7 N 1.31510 * 120.00120 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00139 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47254 * 270.00482 * 8 6 4 10 10 H 1.48499 * 109.46825 * 30.00386 * 8 6 4 11 11 H 1.48493 * 109.47295 * 150.00226 * 8 6 4 12 12 N 1.46901 * 109.46912 * 119.99607 * 2 1 3 13 13 C 1.46895 * 111.00262 * 273.71275 * 12 2 1 14 14 H 1.09000 * 109.46893 * 32.48857 * 13 12 2 15 15 C 1.53001 * 109.46918 * 152.48559 * 13 12 2 16 16 C 1.53000 * 109.46900 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47134 * 299.99932 * 16 15 13 18 18 C 1.52995 * 109.47124 * 59.99941 * 17 16 15 19 19 H 1.09008 * 109.47106 * 60.00286 * 18 17 16 20 20 O 1.42894 * 109.47252 * 180.02562 * 18 17 16 21 21 C 1.52996 * 109.47287 * 272.48865 * 13 12 2 22 22 H 1.09008 * 109.46830 * 181.37595 * 1 2 3 23 23 H 1.08998 * 109.47377 * 301.37654 * 1 2 3 24 24 H 1.09003 * 109.47027 * 61.37907 * 1 2 3 25 25 H 0.97001 * 120.00710 * 179.97438 * 7 6 4 26 26 H 1.00899 * 111.00022 * 37.67250 * 12 2 1 27 27 H 1.09004 * 109.47047 * 300.00000 * 15 13 12 28 28 H 1.08991 * 109.47489 * 59.99988 * 15 13 12 29 29 H 1.09000 * 109.47206 * 60.00119 * 16 15 13 30 30 H 1.09000 * 109.47204 * 179.97438 * 16 15 13 31 31 H 1.08996 * 109.46919 * 180.02562 * 17 16 15 32 32 H 1.08999 * 109.46344 * 299.99952 * 17 16 15 33 33 H 0.96707 * 113.99680 * 299.99991 * 20 18 17 34 34 H 1.09004 * 109.46626 * 299.99304 * 21 13 12 35 35 H 1.08991 * 109.47664 * 60.00089 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.6297 -0.5459 -4.4123 10 1 2.4859 -2.5662 -3.7119 11 1 1.3432 -0.9493 -5.1120 12 7 2.0196 -0.6924 1.1995 13 6 2.1114 0.2298 2.3392 14 1 1.3260 0.9817 2.2622 15 6 1.9423 -0.5525 3.6432 16 6 2.0372 0.4081 4.8302 17 6 3.4039 1.0959 4.8216 18 6 3.5730 1.8782 3.5177 19 1 2.7874 2.6300 3.4405 20 8 4.8496 2.5201 3.5094 21 6 3.4782 0.9172 2.3303 22 1 -0.3633 -1.0275 0.0247 23 1 -0.3634 0.5350 0.8773 24 1 -0.3633 0.4923 -0.9021 25 1 0.7094 1.1617 -3.4844 26 1 1.4372 -1.4857 1.4222 27 1 0.9685 -1.0422 3.6494 28 1 2.7275 -1.3045 3.7202 29 1 1.2517 1.1598 4.7530 30 1 1.9164 -0.1491 5.7591 31 1 3.4717 1.7800 5.6675 32 1 4.1894 0.3442 4.8988 33 1 4.9805 3.1448 4.2359 34 1 4.2635 0.1651 2.4074 35 1 3.5987 1.4745 1.4015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306312491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:01 Heat of formation + Delta-G solvation = -72.957166 kcal Electronic energy + Delta-G solvation = -14843.534162 eV Core-core repulsion = 12454.338914 eV Total energy + Delta-G solvation = -2389.195248 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.92510 -36.24897 -34.53187 -32.26580 -29.81631 -29.25784 -26.47891 -25.07780 -22.26646 -21.67264 -19.90790 -19.52554 -17.03318 -16.18863 -15.33778 -14.76734 -14.48148 -14.31709 -13.80245 -13.21202 -13.01461 -12.45754 -12.31910 -11.80571 -11.60585 -11.42012 -11.00148 -10.89677 -10.80140 -10.61997 -10.44683 -10.35422 -10.15203 -10.05711 -9.76466 -9.43163 -8.93627 -8.31358 -7.20101 -5.94089 -3.97036 3.36280 3.42073 3.46353 4.31047 4.48552 4.85481 4.87057 5.12591 5.34899 5.37588 5.44694 5.59976 5.66650 5.75065 5.76881 5.91001 6.06529 6.22710 6.25861 6.41133 6.47365 6.71629 6.72137 6.85136 6.87988 7.15107 7.42038 7.77978 7.80208 7.94477 8.33385 8.60300 8.67294 9.10482 9.68215 11.12974 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.042165 B = 0.007405 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.893579 B = 3780.546569 C = 4060.062278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.275 1.275 11 H -0.289 1.289 12 N -0.681 5.681 13 C 0.093 3.907 14 H 0.036 0.964 15 C -0.123 4.123 16 C -0.113 4.113 17 C -0.148 4.148 18 C 0.103 3.897 19 H 0.050 0.950 20 O -0.567 6.567 21 C -0.096 4.096 22 H 0.027 0.973 23 H 0.004 0.996 24 H 0.089 0.911 25 H 0.259 0.741 26 H 0.327 0.673 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.370 0.630 34 H 0.070 0.930 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 1.167 13.663 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.215 1.215 12 N -0.311 5.311 13 C -0.017 4.017 14 H 0.054 0.946 15 C -0.161 4.161 16 C -0.151 4.151 17 C -0.186 4.186 18 C 0.044 3.956 19 H 0.068 0.932 20 O -0.371 6.371 21 C -0.135 4.135 22 H 0.046 0.954 23 H 0.023 0.977 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.144 0.856 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.216 0.784 34 H 0.089 0.911 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.304 0.963 12.790 13.031 hybrid contribution -0.835 0.105 -0.143 0.853 sum 1.469 1.068 12.647 12.777 Atomic orbital electron populations 1.22440 1.00814 0.98895 1.00682 1.19212 0.89463 0.94416 0.86582 0.94851 1.21179 1.29981 1.12391 0.89635 0.91954 1.24953 0.95379 0.95247 0.99034 1.69879 1.37447 1.23281 1.23267 0.86514 0.78449 0.80027 0.82491 1.20773 1.19959 1.21461 1.60736 1.57379 1.09478 1.03460 1.21301 0.95343 0.94625 0.90471 0.94574 1.21792 1.01772 0.98286 0.94293 1.21429 0.96682 0.98698 0.98335 1.22253 0.98446 1.00240 0.97675 1.21901 0.84499 0.93850 0.95309 0.93182 1.86578 1.36101 1.60923 1.53528 1.21443 0.98128 0.97394 0.96508 0.95411 0.97720 0.89215 0.93127 0.85609 0.92208 0.91257 0.92109 0.91991 0.92398 0.91179 0.78432 0.91089 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.95 37.16 0.33 -3.78 16 2 C 0.21 5.38 2.38 -68.86 -0.16 5.21 16 3 H 0.03 0.94 7.30 -51.93 -0.38 0.56 16 4 C -0.49 -13.90 8.84 -34.44 -0.30 -14.21 16 5 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.14 11.31 55.43 0.63 -25.51 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 N -0.68 -14.59 6.05 -100.96 -0.61 -15.20 16 13 C 0.09 1.68 2.29 -67.72 -0.16 1.52 16 14 H 0.04 0.69 7.22 -51.93 -0.37 0.32 16 15 C -0.12 -1.76 5.17 -26.73 -0.14 -1.90 16 16 C -0.11 -1.34 5.92 -26.73 -0.16 -1.50 16 17 C -0.15 -1.76 5.54 -26.73 -0.15 -1.91 16 18 C 0.10 1.50 3.47 -26.71 -0.09 1.41 16 19 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 20 O -0.57 -8.14 13.32 -35.23 -0.47 -8.60 16 21 C -0.10 -1.74 5.09 -26.71 -0.14 -1.88 16 22 H 0.03 0.64 8.11 -51.92 -0.42 0.22 16 23 H 0.00 0.08 7.57 -51.93 -0.39 -0.31 16 24 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.33 6.60 8.01 -39.29 -0.31 6.29 16 27 H 0.06 0.82 8.12 -51.93 -0.42 0.39 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.37 3.40 9.08 45.56 0.41 3.81 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.52 7.63 -51.93 -0.40 1.12 16 LS Contribution 276.70 15.07 4.17 4.17 Total: -1.00 -30.07 276.70 -7.47 -37.54 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.11 Total: 6.32 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -1.06 Total: -15.60 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.02 Total: -40.71 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.47 Total: -8.60 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.07 -7.47 -37.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306312491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.421 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds