Wall clock time and date at job start Mon Mar 30 2020 20:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47017 * 2 1 4 4 C 1.50706 * 109.46941 * 119.99962 * 2 1 3 5 5 N 1.30456 * 125.73754 * 299.97118 * 4 2 1 6 6 C 1.34274 * 109.41838 * 180.02562 * 5 4 2 7 7 C 1.34751 * 108.27419 * 0.02562 * 6 5 4 8 8 Cl 1.73604 * 126.59231 * 179.97438 * 7 6 5 9 9 N 1.36366 * 125.73479 * 120.00244 * 4 2 1 10 10 C 1.37579 * 126.51471 * 0.02562 * 9 4 2 11 11 H 1.07995 * 120.00470 * 36.08048 * 10 9 4 12 12 C 1.38934 * 119.99658 * 216.07997 * 10 9 4 13 13 N 1.31347 * 120.00005 * 20.42134 * 12 10 9 14 14 Si 1.86796 * 120.00270 * 200.41890 * 12 10 9 15 15 H 1.48500 * 109.46783 * 60.00119 * 14 12 10 16 16 H 1.48497 * 109.47213 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47069 * 300.00413 * 14 12 10 18 18 H 1.09002 * 109.47549 * 299.99876 * 1 2 3 19 19 H 1.08999 * 109.47431 * 60.00390 * 1 2 3 20 20 H 1.09001 * 109.46694 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46924 * 239.99933 * 2 1 3 22 22 H 1.09002 * 109.46860 * 59.99702 * 3 2 1 23 23 H 1.08993 * 109.46955 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.46701 * 300.00057 * 3 2 1 25 25 H 1.08000 * 125.86368 * 180.27091 * 6 5 4 26 26 H 0.96988 * 120.00074 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7875 -0.3634 2.4640 6 6 2.3952 -1.2222 3.2984 7 6 3.0456 -2.1415 2.5584 8 17 3.9878 -3.4720 3.1550 9 7 2.8196 -1.8238 1.2417 10 6 3.2980 -2.4993 0.1428 11 1 3.5870 -1.9534 -0.7430 12 6 3.4091 -3.8839 0.1727 13 7 2.7133 -4.5800 1.0425 14 14 4.5481 -4.7555 -1.0241 15 1 5.9396 -4.2794 -0.8191 16 1 4.4868 -6.2203 -0.7882 17 1 4.1237 -4.4596 -2.4161 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 1.6766 1.9563 0.8900 23 1 3.1299 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 2.3644 -1.1850 4.3773 26 1 2.7907 -5.5465 1.0631 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995360.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:15 Heat of formation + Delta-G solvation = 16.358068 kcal Electronic energy + Delta-G solvation = -12552.337549 eV Core-core repulsion = 10270.632365 eV Total energy + Delta-G solvation = -2281.705184 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.43374 -37.12054 -35.95697 -35.77721 -32.91615 -29.09422 -27.90823 -27.15060 -23.47862 -22.34787 -20.47994 -19.25423 -17.58472 -16.46477 -15.94599 -15.81194 -15.10350 -14.61063 -14.34649 -13.87177 -13.61623 -13.14235 -13.01549 -12.88998 -12.36049 -12.31624 -12.21126 -11.96654 -11.89405 -11.64761 -11.12921 -10.61803 -10.09288 -8.74414 -8.64920 -6.51716 1.22389 1.38092 1.44269 1.49398 1.68465 2.15427 2.40141 2.86824 3.16032 3.85086 4.20846 4.40132 4.45622 4.80244 4.88972 4.90509 5.05725 5.08522 5.16334 5.19189 5.45027 5.47419 5.54651 6.13623 6.19991 6.78528 7.36439 7.56731 8.37662 Molecular weight = 214.06amu Principal moments of inertia in cm(-1) A = 0.028699 B = 0.014563 C = 0.010782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.426206 B = 1922.173315 C = 2596.264056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.003 3.997 3 C -0.124 4.124 4 C 0.130 3.870 5 N -0.512 5.512 6 C -0.072 4.072 7 C 0.004 3.996 8 Cl -0.028 7.028 9 N -0.270 5.270 10 C -0.400 4.400 11 H 0.114 0.886 12 C 0.030 3.970 13 N -0.835 5.835 14 Si 0.989 3.011 15 H -0.265 1.265 16 H -0.273 1.273 17 H -0.253 1.253 18 H 0.054 0.946 19 H 0.088 0.912 20 H 0.030 0.970 21 H 0.076 0.924 22 H 0.054 0.946 23 H 0.039 0.961 24 H 0.087 0.913 25 H 0.173 0.827 26 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 3.141 -3.344 4.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.017 4.017 3 C -0.182 4.182 4 C -0.128 4.128 5 N -0.233 5.233 6 C -0.226 4.226 7 C -0.145 4.145 8 Cl 0.000 7.000 9 N 0.063 4.937 10 C -0.527 4.527 11 H 0.132 0.868 12 C -0.183 4.183 13 N -0.463 5.463 14 Si 0.809 3.191 15 H -0.189 1.189 16 H -0.198 1.198 17 H -0.176 1.176 18 H 0.073 0.927 19 H 0.107 0.893 20 H 0.049 0.951 21 H 0.094 0.906 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.106 0.894 25 H 0.190 0.810 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.339 3.403 -3.141 4.643 hybrid contribution 1.048 -1.740 -0.159 2.037 sum 1.387 1.663 -3.299 3.946 Atomic orbital electron populations 1.21635 0.93013 1.00763 1.02694 1.19427 0.96546 0.95461 0.90306 1.21669 1.00047 0.93717 1.02771 1.23605 0.99892 0.93556 0.95745 1.69919 1.24934 1.28703 0.99729 1.21833 1.05610 0.95841 0.99324 1.21758 1.09706 0.96677 0.86312 1.98210 1.70545 1.46260 1.84991 1.41579 1.28984 1.18681 1.04499 1.19982 1.47275 0.90561 0.94900 0.86807 1.26331 0.96191 0.96732 0.99079 1.70112 1.32831 1.08772 1.34566 0.85066 0.78500 0.77005 0.78517 1.18915 1.19750 1.17642 0.92703 0.89306 0.95086 0.90607 0.92654 0.94164 0.89418 0.81023 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.16 9.18 71.98 0.66 -3.50 15 2 C 0.00 0.11 3.26 -11.54 -0.04 0.07 15 3 C -0.12 -3.94 9.18 71.98 0.66 -3.28 15 4 C 0.13 6.35 6.41 137.72 0.88 7.23 15 5 N -0.51 -25.43 11.24 -187.03 -2.10 -27.53 15 6 C -0.07 -3.58 11.84 83.52 0.99 -2.59 15 7 C 0.00 0.20 6.82 83.03 0.57 0.76 15 8 Cl -0.03 -1.33 26.05 -2.72 -0.07 -1.40 15 9 N -0.27 -14.32 2.82 -330.11 -0.93 -15.25 15 10 C -0.40 -20.64 9.26 83.96 0.78 -19.87 15 11 H 0.11 5.53 7.52 -2.91 -0.02 5.51 15 12 C 0.03 1.46 4.54 84.93 0.39 1.85 15 13 N -0.84 -43.66 10.78 21.65 0.23 -43.43 15 14 Si 0.99 38.25 29.60 68.60 2.03 40.28 15 15 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 16 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 17 H -0.25 -9.14 7.11 99.48 0.71 -8.44 15 18 H 0.05 1.89 8.14 -2.39 -0.02 1.87 15 19 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 20 H 0.03 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.08 2.94 7.14 -2.39 -0.02 2.93 15 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 23 H 0.04 1.32 8.14 -2.39 -0.02 1.31 15 24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 25 H 0.17 7.41 8.06 -2.91 -0.02 7.38 15 26 H 0.28 13.88 8.31 -92.72 -0.77 13.11 15 Total: -1.00 -59.92 242.17 5.21 -54.70 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.17 Total: 11.96 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 4.88 Total: -19.32 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -2.80 Total: -86.21 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.07 Total: -1.40 kcal Total: -59.92 5.21 -54.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995360.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.061 kcal (2) G-P(sol) polarization free energy of solvation -59.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds