Wall clock time and date at job start Mon Mar 30 2020 20:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86796 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47173 * 240.00184 * 3 2 1 5 5 H 1.48497 * 109.47229 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47005 * 120.00048 * 3 2 1 7 7 C 1.38652 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99982 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99845 * 359.97438 * 7 2 1 10 10 C 1.35767 * 116.99535 * 185.07299 * 9 7 2 11 11 C 1.38784 * 120.04471 * 354.40500 * 10 9 7 12 12 C 1.38580 * 119.88762 * 180.29506 * 11 10 9 13 13 O 1.35917 * 120.00857 * 179.97438 * 12 11 10 14 14 C 1.38807 * 119.97960 * 0.02562 * 12 11 10 15 15 C 1.38209 * 120.09601 * 359.97438 * 14 12 11 16 16 C 1.38232 * 120.10465 * 0.02562 * 15 14 12 17 17 Cl 1.73602 * 119.99014 * 179.97438 * 16 15 14 18 18 H 0.96999 * 120.00585 * 359.97438 * 1 2 3 19 19 H 1.07997 * 120.06037 * 0.25574 * 11 10 9 20 20 H 0.96698 * 114.00175 * 270.04621 * 13 12 11 21 21 H 1.07998 * 119.95269 * 179.97438 * 14 12 11 22 22 H 1.07999 * 119.94353 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1059 11 6 3.4563 -3.4390 0.0914 12 6 4.2038 -4.6015 0.1941 13 8 5.5615 -4.5401 0.1797 14 6 3.5654 -5.8285 0.3107 15 6 2.1849 -5.8930 0.3250 16 6 1.4357 -4.7358 0.2228 17 17 -0.2982 -4.8203 0.2404 18 1 -0.4851 0.8400 0.0004 19 1 3.9518 -2.4838 -0.0003 20 1 5.9487 -4.6030 -0.7041 21 1 4.1483 -6.7342 0.3902 22 1 1.6908 -6.8490 0.4161 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260039492.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:17 Heat of formation + Delta-G solvation = -54.344665 kcal Electronic energy + Delta-G solvation = -11806.650206 eV Core-core repulsion = 9353.753276 eV Total energy + Delta-G solvation = -2452.896930 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 214.018 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.41030 -37.58469 -35.99090 -34.96180 -32.39160 -29.48382 -28.57518 -25.47211 -22.08144 -21.64282 -18.44632 -17.87934 -16.48953 -15.46148 -15.12001 -14.66216 -14.21114 -13.80067 -13.26990 -12.96777 -12.10911 -11.84407 -11.77885 -11.45028 -11.05216 -10.57118 -10.39299 -10.21775 -10.00135 -9.64099 -8.94979 -8.07185 -7.36731 -6.55404 -4.15200 1.76251 2.08693 3.05444 3.08441 3.10037 3.12650 3.87352 4.15495 4.65852 4.93423 5.08188 5.51314 5.75378 6.01104 6.34035 6.40303 6.70822 6.79898 7.02397 7.17065 7.33030 7.85114 8.06952 8.87484 9.50611 10.60494 Molecular weight = 214.02amu Principal moments of inertia in cm(-1) A = 0.028476 B = 0.011652 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.051174 B = 2402.422893 C = 3371.076121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.399 4.399 8 H 0.094 0.906 9 O -0.151 6.151 10 C 0.169 3.831 11 C -0.252 4.252 12 C 0.150 3.850 13 O -0.504 6.504 14 C -0.232 4.232 15 C -0.052 4.052 16 C -0.116 4.116 17 Cl -0.077 7.077 18 H 0.273 0.727 19 H 0.141 0.859 20 H 0.385 0.615 21 H 0.120 0.880 22 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.330 -6.396 -1.191 8.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.475 4.475 8 H 0.112 0.888 9 O -0.052 6.052 10 C 0.112 3.888 11 C -0.272 4.272 12 C 0.106 3.894 13 O -0.314 6.314 14 C -0.252 4.252 15 C -0.071 4.071 16 C -0.144 4.144 17 Cl -0.049 7.049 18 H 0.083 0.917 19 H 0.158 0.842 20 H 0.240 0.760 21 H 0.138 0.862 22 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.640 -6.096 -0.602 7.684 hybrid contribution 0.478 0.752 -0.487 1.015 sum 5.118 -5.344 -1.089 7.479 Atomic orbital electron populations 1.70047 1.06000 1.28143 1.44028 1.25335 0.95868 0.98928 0.96046 0.85746 0.78748 0.79429 0.79347 1.19355 1.20126 1.19317 1.21364 0.91935 0.80632 1.53530 0.88834 1.84071 1.33662 1.11152 1.76340 1.18801 0.89536 0.87490 0.92960 1.21292 0.93022 0.99352 1.13572 1.18228 0.81915 0.92001 0.97286 1.84760 1.17119 1.96096 1.33437 1.20734 0.93735 0.96837 1.13909 1.20428 0.92896 0.95979 0.97794 1.19973 0.84278 0.92677 1.17450 1.98305 1.10531 1.98598 1.97444 0.91671 0.84197 0.75988 0.86176 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.39 13.67 55.48 0.76 -23.63 14 2 C 0.04 1.20 5.49 -17.51 -0.10 1.10 14 3 Si 0.94 20.06 29.55 -169.99 -5.02 15.03 14 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 14 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 14 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 14 7 C -0.40 -10.91 9.49 30.89 0.29 -10.62 14 8 H 0.09 2.36 5.20 -52.49 -0.27 2.09 14 9 O -0.15 -4.22 9.21 0.00 0.00 -4.22 14 10 C 0.17 4.06 6.64 -39.10 -0.26 3.80 14 11 C -0.25 -5.46 9.10 -39.25 -0.36 -5.82 14 12 C 0.15 2.80 6.70 -39.24 -0.26 2.54 14 13 O -0.50 -8.04 13.50 -19.48 -0.26 -8.30 14 14 C -0.23 -4.00 9.98 -39.38 -0.39 -4.40 14 15 C -0.05 -0.93 9.82 -39.59 -0.39 -1.32 14 16 C -0.12 -2.49 6.34 -39.30 -0.25 -2.74 14 17 Cl -0.08 -1.61 28.50 -51.86 -1.48 -3.09 14 18 H 0.27 7.20 8.31 -40.82 -0.34 6.86 14 19 H 0.14 3.03 5.64 -52.49 -0.30 2.74 14 20 H 0.39 4.07 9.06 45.56 0.41 4.48 14 21 H 0.12 1.74 8.06 -52.49 -0.42 1.31 14 22 H 0.13 1.88 8.06 -52.49 -0.42 1.46 14 LS Contribution 223.65 15.07 3.37 3.37 Total: -1.00 -30.48 223.65 -4.49 -34.97 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -0.14 Total: 3.33 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.71 Total: -17.46 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.76 Total: -23.63 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.26 Total: -12.52 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -1.48 Total: -3.09 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -30.48 -4.49 -34.97 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039492.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.378 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds