Wall clock time and date at job start Mon Mar 30 2020 20:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48499 * 109.46802 * 270.00319 * 3 2 1 5 5 H 1.48499 * 109.46998 * 29.99669 * 3 2 1 6 6 H 1.48494 * 109.47135 * 149.99939 * 3 2 1 7 7 C 1.37872 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00329 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47107 * 180.02562 * 9 7 2 11 11 N 1.31809 * 119.12396 * 269.97502 * 10 9 7 12 12 C 1.32313 * 120.81954 * 179.72922 * 11 10 9 13 13 C 1.38624 * 119.10338 * 0.57390 * 12 11 10 14 14 C 1.38574 * 118.39673 * 359.43958 * 13 12 11 15 15 C 1.50703 * 120.44930 * 180.30273 * 14 13 12 16 16 F 1.39905 * 109.47274 * 210.00398 * 15 14 13 17 17 F 1.39902 * 109.46548 * 329.99755 * 15 14 13 18 18 N 1.31789 * 119.12383 * 90.00364 * 10 9 7 19 19 H 0.97001 * 120.00211 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47036 * 59.99533 * 9 7 2 21 21 H 1.09003 * 109.46484 * 300.00116 * 9 7 2 22 22 H 1.07999 * 120.44989 * 180.31173 * 12 11 10 23 23 H 1.08002 * 120.80485 * 179.72100 * 13 12 11 24 24 H 1.09000 * 109.47382 * 89.99521 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0018 11 7 2.6477 -4.1330 -1.1491 12 6 3.5113 -5.1348 -1.1871 13 6 3.9671 -5.6776 0.0042 14 6 3.5055 -5.1374 1.1938 15 6 3.9759 -5.6873 2.5157 16 9 2.9691 -5.5246 3.4734 17 9 4.2712 -7.0477 2.3762 18 7 2.6462 -4.1316 1.1536 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5566 0.8903 22 1 3.8531 -5.5270 -2.1335 23 1 4.6687 -6.4987 0.0051 24 1 4.8705 -5.1522 2.8343 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260065383.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:21 Heat of formation + Delta-G solvation = -81.491115 kcal Electronic energy + Delta-G solvation = -13570.923703 eV Core-core repulsion = 10733.178780 eV Total energy + Delta-G solvation = -2837.744923 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.06811 -48.08277 -42.02432 -35.75481 -35.06211 -33.76718 -30.32726 -28.47809 -26.13284 -24.28629 -22.94439 -19.09565 -18.80350 -18.53083 -18.49657 -17.62683 -16.67829 -16.39610 -15.84514 -15.51298 -14.92528 -14.46950 -14.39111 -14.15233 -13.96863 -13.54172 -12.86908 -12.68114 -12.58343 -12.23843 -11.86950 -11.71397 -11.55069 -10.65599 -10.39313 -10.26609 -8.26679 -6.39183 -0.21365 0.04877 1.39322 1.41613 1.52409 2.23887 2.35899 2.70890 3.02196 3.05898 3.08679 3.28668 3.76037 3.92514 4.06320 4.15213 4.46505 4.63237 5.15437 5.29153 5.35615 5.62364 5.98394 6.05929 6.66217 7.15911 7.27718 8.85141 Molecular weight = 214.06amu Principal moments of inertia in cm(-1) A = 0.040833 B = 0.007818 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.549866 B = 3580.583994 C = 3859.869431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.527 4.527 8 H 0.048 0.952 9 C 0.087 3.913 10 C 0.341 3.659 11 N -0.535 5.535 12 C 0.147 3.853 13 C -0.203 4.203 14 C 0.072 3.928 15 C 0.333 3.667 16 F -0.203 7.203 17 F -0.188 7.188 18 N -0.525 5.525 19 H 0.269 0.731 20 H 0.026 0.974 21 H 0.021 0.979 22 H 0.217 0.783 23 H 0.197 0.803 24 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.293 -11.736 1.445 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.067 0.933 9 C 0.048 3.952 10 C 0.075 3.925 11 N -0.250 5.250 12 C -0.019 4.019 13 C -0.224 4.224 14 C -0.076 4.076 15 C 0.279 3.721 16 F -0.184 7.184 17 F -0.169 7.169 18 N -0.239 5.239 19 H 0.078 0.922 20 H 0.044 0.956 21 H 0.039 0.961 22 H 0.233 0.767 23 H 0.214 0.786 24 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 10.458 -10.915 1.481 15.189 hybrid contribution 0.381 0.129 0.053 0.406 sum 10.839 -10.786 1.533 15.368 Atomic orbital electron populations 1.70061 1.07607 1.28370 1.50344 1.25895 0.95891 1.03104 0.94099 0.85320 0.78368 0.77873 0.78697 1.19373 1.19999 1.19273 1.20998 0.92585 0.90579 1.52382 0.93343 1.17888 0.91652 0.88433 0.97215 1.23637 0.93048 0.93063 0.82724 1.68379 1.13508 1.12560 1.30517 1.24163 0.88565 0.88464 1.00749 1.22947 1.03650 1.03506 0.92323 1.22776 0.93952 0.93198 0.97632 1.20408 0.90767 0.78838 0.82062 1.93011 1.64643 1.95365 1.65402 1.93011 1.93539 1.34364 1.95986 1.67973 1.12566 1.11618 1.31788 0.92167 0.95594 0.96110 0.76678 0.78626 0.80774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.97 13.29 21.45 0.28 -55.68 14 2 C 0.01 0.53 5.46 84.65 0.46 0.99 14 3 Si 0.97 44.59 29.54 68.60 2.03 46.62 14 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 14 5 H -0.27 -12.10 7.11 99.48 0.71 -11.40 14 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 14 7 C -0.53 -30.99 9.09 25.60 0.23 -30.75 14 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 14 9 C 0.09 4.90 5.41 29.10 0.16 5.06 14 10 C 0.34 16.29 6.83 138.75 0.95 17.24 14 11 N -0.54 -22.27 10.33 -187.84 -1.94 -24.21 14 12 C 0.15 4.16 11.31 84.71 0.96 5.12 14 13 C -0.20 -5.02 9.52 22.44 0.21 -4.80 14 14 C 0.07 2.30 6.60 42.56 0.28 2.59 14 15 C 0.33 8.08 5.74 71.24 0.41 8.49 14 16 F -0.20 -6.39 17.09 44.97 0.77 -5.62 14 17 F -0.19 -4.03 16.56 44.97 0.74 -3.29 14 18 N -0.52 -22.89 10.00 -176.03 -1.76 -24.65 14 19 H 0.27 15.15 8.31 -92.71 -0.77 14.38 14 20 H 0.03 1.54 8.14 -2.39 -0.02 1.52 14 21 H 0.02 1.25 8.14 -2.39 -0.02 1.23 14 22 H 0.22 3.75 8.06 -2.91 -0.02 3.73 14 23 H 0.20 2.84 7.69 -2.91 -0.02 2.82 14 24 H 0.18 2.74 8.14 -2.39 -0.02 2.72 14 Total: -1.00 -72.40 234.31 5.01 -67.39 By element: Atomic # 1 Polarization: -5.71 SS G_CDS: 1.22 Total: -4.49 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 3.66 Total: 3.93 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -3.42 Total: -104.54 kcal Atomic # 9 Polarization: -10.43 SS G_CDS: 1.51 Total: -8.91 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -72.40 5.01 -67.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065383.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.098 kcal (2) G-P(sol) polarization free energy of solvation -72.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds