Wall clock time and date at job start Mon Mar 30 2020 20:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38710 * 120.02766 * 89.99905 * 10 9 7 12 12 O 1.35939 * 120.02026 * 359.95693 * 11 10 9 13 13 C 1.38679 * 119.95724 * 179.97438 * 11 10 9 14 14 C 1.38216 * 120.01687 * 0.02562 * 13 11 10 15 15 C 1.38362 * 120.05227 * 359.97438 * 14 13 11 16 16 F 1.35098 * 119.97825 * 180.02562 * 15 14 13 17 17 C 1.38318 * 120.02333 * 269.72001 * 10 9 7 18 18 F 1.35099 * 120.00970 * 0.02562 * 17 10 9 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 0.96694 * 114.00560 * 89.99791 * 12 11 10 23 23 H 1.08003 * 119.99474 * 180.02562 * 13 11 10 24 24 H 1.07997 * 119.97314 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6812 -4.1776 1.1882 12 8 2.2407 -3.6664 2.3683 13 6 3.5819 -5.2320 1.1819 14 6 4.0304 -5.7511 -0.0180 15 6 3.5809 -5.2199 -1.2139 16 9 4.0198 -5.7288 -2.3859 17 6 2.6756 -4.1691 -1.2102 18 9 2.2332 -3.6544 -2.3784 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 1.4415 -4.0920 2.7075 23 1 3.9331 -5.6477 2.1148 24 1 4.7322 -6.5720 -0.0221 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260138870.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:22 Heat of formation + Delta-G solvation = -139.412998 kcal Electronic energy + Delta-G solvation = -13907.387113 eV Core-core repulsion = 11034.837757 eV Total energy + Delta-G solvation = -2872.549356 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.055 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.42297 -49.50500 -40.63936 -37.28380 -35.52238 -33.08236 -30.41044 -28.97282 -25.59356 -23.65457 -22.62433 -19.63413 -18.72031 -18.52574 -18.14324 -17.44059 -17.16391 -16.55861 -15.95811 -15.74211 -15.39586 -14.75051 -14.51787 -14.32827 -13.86662 -13.23561 -13.10341 -12.62574 -12.52551 -12.48118 -12.04987 -11.63018 -11.34157 -10.64132 -9.74744 -9.47459 -8.24845 -6.36483 -0.09913 0.08976 1.36876 1.38347 1.49628 2.29696 2.43139 2.82865 3.07272 3.21852 3.49501 3.74791 4.00857 4.16354 4.71438 4.84003 4.94741 4.99371 5.20039 5.25060 5.56712 5.66539 5.75680 6.08385 6.71736 6.90323 7.30692 8.85355 Molecular weight = 214.05amu Principal moments of inertia in cm(-1) A = 0.034483 B = 0.010182 C = 0.008901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.787960 B = 2749.212049 C = 3144.804230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.047 0.953 9 C 0.065 3.935 10 C -0.109 4.109 11 C 0.119 3.881 12 O -0.493 6.493 13 C -0.108 4.108 14 C -0.108 4.108 15 C 0.045 3.955 16 F -0.137 7.137 17 C 0.046 3.954 18 F -0.146 7.146 19 H 0.267 0.733 20 H 0.027 0.973 21 H -0.001 1.001 22 H 0.407 0.593 23 H 0.185 0.815 24 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 -11.867 3.393 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.066 0.934 9 C 0.029 3.971 10 C -0.111 4.111 11 C 0.074 3.926 12 O -0.305 6.305 13 C -0.126 4.126 14 C -0.126 4.126 15 C 0.025 3.975 16 F -0.116 7.116 17 C 0.026 3.974 18 F -0.125 7.125 19 H 0.076 0.924 20 H 0.045 0.955 21 H 0.017 0.983 22 H 0.266 0.734 23 H 0.202 0.798 24 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 7.074 -11.386 3.258 13.795 hybrid contribution -0.565 0.926 -0.762 1.325 sum 6.509 -10.460 2.497 12.570 Atomic orbital electron populations 1.70054 1.07472 1.28023 1.51069 1.25859 0.95848 1.02950 0.94431 0.85452 0.78727 0.78496 0.78447 1.20009 1.19886 1.19058 1.21215 0.92711 0.91225 1.51297 0.93439 1.17872 0.92574 0.90084 0.96607 1.20832 1.00165 0.98113 0.91991 1.18252 0.96867 0.93310 0.84194 1.84840 1.48623 1.63232 1.33841 1.21637 0.96788 0.94127 1.00037 1.21207 1.01415 1.01852 0.88153 1.17858 0.99521 0.96583 0.83527 1.91468 1.88067 1.85961 1.46113 1.17756 1.00511 0.97262 0.81867 1.91435 1.88353 1.86555 1.46155 0.92448 0.95469 0.98318 0.73392 0.79793 0.79307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.11 14 2 C 0.01 0.44 5.46 84.66 0.46 0.90 14 3 Si 0.96 45.53 29.54 68.60 2.03 47.56 14 4 H -0.27 -12.65 7.11 99.48 0.71 -11.95 14 5 H -0.27 -12.34 7.11 99.48 0.71 -11.64 14 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 14 7 C -0.53 -31.09 9.09 25.60 0.23 -30.86 14 8 H 0.05 2.81 7.74 -2.91 -0.02 2.78 14 9 C 0.07 3.55 4.71 29.10 0.14 3.69 14 10 C -0.11 -4.81 5.09 -19.73 -0.10 -4.91 14 11 C 0.12 4.12 6.67 22.49 0.15 4.28 14 12 O -0.49 -16.48 12.55 -92.87 -1.17 -17.65 14 13 C -0.11 -2.63 9.98 22.37 0.22 -2.41 14 14 C -0.11 -2.59 10.02 22.29 0.22 -2.37 14 15 C 0.05 1.50 7.30 22.41 0.16 1.67 14 16 F -0.14 -4.54 17.18 44.97 0.77 -3.76 14 17 C 0.05 1.95 7.25 22.40 0.16 2.11 14 18 F -0.15 -6.97 16.38 44.97 0.74 -6.23 14 19 H 0.27 15.17 8.31 -92.70 -0.77 14.40 14 20 H 0.03 1.49 7.53 -2.38 -0.02 1.47 14 21 H 0.00 -0.09 7.63 -2.39 -0.02 -0.11 14 22 H 0.41 9.33 9.06 -74.06 -0.67 8.65 14 23 H 0.18 2.87 8.06 -2.91 -0.02 2.85 14 24 H 0.19 2.78 8.06 -2.91 -0.02 2.76 14 Total: -1.00 -71.22 232.21 4.88 -66.34 By element: Atomic # 1 Polarization: -2.82 SS G_CDS: 0.57 Total: -2.25 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 1.65 Total: -27.89 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.28 Total: -56.11 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.17 Total: -17.65 kcal Atomic # 9 Polarization: -11.50 SS G_CDS: 1.51 Total: -10.00 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -71.22 4.88 -66.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260138870.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.074 kcal (2) G-P(sol) polarization free energy of solvation -71.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds