Wall clock time and date at job start Mon Mar 30 2020 20:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48497 * 109.46716 * 269.99808 * 3 2 1 5 5 H 1.48495 * 109.47102 * 29.99343 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99482 * 3 2 1 7 7 C 1.37876 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00217 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00399 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.47463 * 180.02562 * 9 7 2 11 11 C 1.38387 * 119.99804 * 124.72012 * 10 9 7 12 12 N 1.32127 * 119.99334 * 180.25323 * 11 10 9 13 13 C 1.32154 * 120.00011 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99512 * 180.02562 * 13 12 11 15 15 F 1.39901 * 109.46677 * 119.98445 * 14 13 12 16 16 F 1.39900 * 109.47310 * 239.97929 * 14 13 12 17 17 C 1.38337 * 120.00458 * 0.02562 * 13 12 11 18 18 N 1.32124 * 119.99937 * 305.00123 * 10 9 7 19 19 H 0.97003 * 119.99794 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47277 * 60.00158 * 9 7 2 21 21 H 1.09009 * 109.46943 * 300.00468 * 9 7 2 22 22 H 1.08001 * 120.00386 * 0.25864 * 11 10 9 23 23 H 1.09001 * 109.47246 * 359.97438 * 14 13 12 24 24 H 1.08001 * 120.00175 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0139 -2.6150 0.0010 11 6 4.8884 -3.0395 -0.9839 12 7 5.3249 -4.2866 -0.9868 13 6 4.9258 -5.1286 -0.0495 14 6 5.4241 -6.5508 -0.0526 15 9 6.1073 -6.8081 1.1408 16 9 4.3380 -7.4253 -0.1660 17 6 4.0507 -4.7044 0.9343 18 7 3.6149 -3.4568 0.9379 19 1 -0.4850 0.8401 -0.0004 20 1 3.8746 -0.6801 0.8911 21 1 3.8752 -0.6804 -0.8889 22 1 5.2143 -2.3516 -1.7500 23 1 6.0984 -6.6978 -0.8964 24 1 3.7243 -5.3926 1.7000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260187805.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:35 Heat of formation + Delta-G solvation = -81.120731 kcal Electronic energy + Delta-G solvation = -13476.393292 eV Core-core repulsion = 10638.664430 eV Total energy + Delta-G solvation = -2837.728862 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.10207 -48.09241 -42.16271 -36.23826 -34.98219 -33.79806 -31.13718 -27.65525 -25.93085 -24.73383 -22.75027 -19.47167 -18.82383 -18.77213 -18.35471 -17.56160 -17.17027 -16.20019 -15.83122 -15.71484 -14.97106 -14.77618 -14.46534 -14.12578 -13.86212 -13.59914 -12.84762 -12.71860 -12.55774 -12.36434 -12.25824 -11.88433 -11.65169 -10.79331 -10.25809 -10.10803 -8.28815 -6.35767 -0.43640 0.01598 1.40872 1.44198 1.54631 2.19633 2.37346 2.50769 3.02923 3.07826 3.21448 3.25742 3.51662 3.79921 3.94111 4.14350 4.19982 4.45609 4.89685 5.11947 5.23497 5.50588 6.07756 6.23775 6.66750 6.75899 7.26267 8.88180 Molecular weight = 214.06amu Principal moments of inertia in cm(-1) A = 0.064658 B = 0.006834 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.947072 B = 4096.112460 C = 4276.170082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.256 1.256 5 H -0.289 1.289 6 H -0.239 1.239 7 C -0.520 4.520 8 H 0.023 0.977 9 C 0.029 3.971 10 C 0.126 3.874 11 C 0.048 3.952 12 N -0.410 5.410 13 C -0.036 4.036 14 C 0.344 3.656 15 F -0.196 7.196 16 F -0.199 7.199 17 C 0.081 3.919 18 N -0.463 5.463 19 H 0.268 0.732 20 H 0.050 0.950 21 H 0.069 0.931 22 H 0.209 0.791 23 H 0.167 0.833 24 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.174 -8.361 -1.771 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.215 1.215 6 H -0.163 1.163 7 C -0.558 4.558 8 H 0.041 0.959 9 C -0.009 4.009 10 C -0.013 4.013 11 C -0.113 4.113 12 N -0.125 5.125 13 C -0.177 4.177 14 C 0.289 3.711 15 F -0.177 7.177 16 F -0.180 7.180 17 C -0.079 4.079 18 N -0.178 5.178 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.226 0.774 23 H 0.184 0.816 24 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 14.021 -8.309 -1.737 16.391 hybrid contribution -0.654 0.558 0.353 0.929 sum 13.368 -7.751 -1.384 15.514 Atomic orbital electron populations 1.70071 1.08622 1.28403 1.52028 1.26048 0.95681 1.03709 0.93765 0.85580 0.79491 0.77345 0.79760 1.18065 1.21454 1.16260 1.20987 0.90381 0.93106 1.51343 0.95864 1.18728 0.95011 0.87445 0.99722 1.22893 0.90440 0.98071 0.89944 1.24056 0.95229 0.92965 0.99052 1.68032 1.20451 1.03063 1.20952 1.22818 1.00674 0.98397 0.95782 1.20088 0.82740 0.81102 0.87197 1.93020 1.79643 1.94423 1.50649 1.93024 1.58132 1.70574 1.96312 1.23949 0.92622 0.93351 0.97958 1.68440 1.20810 1.03314 1.25254 0.92329 0.93239 0.91253 0.77394 0.81621 0.79874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 13.96 21.45 0.30 -58.81 14 2 C 0.00 0.28 5.47 84.65 0.46 0.74 14 3 Si 0.96 41.40 27.47 68.60 1.88 43.29 14 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 14 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 14 6 H -0.24 -9.32 6.54 99.48 0.65 -8.67 14 7 C -0.52 -29.41 9.47 25.60 0.24 -29.17 14 8 H 0.02 1.51 7.93 -2.91 -0.02 1.49 14 9 C 0.03 1.27 4.46 29.10 0.13 1.40 14 10 C 0.13 5.05 6.12 42.55 0.26 5.31 14 11 C 0.05 1.52 10.85 84.68 0.92 2.44 14 12 N -0.41 -12.30 10.41 -183.29 -1.91 -14.21 14 13 C -0.04 -1.04 6.28 42.54 0.27 -0.77 14 14 C 0.34 7.47 5.56 71.24 0.40 7.87 14 15 F -0.20 -4.47 17.26 44.97 0.78 -3.70 14 16 F -0.20 -4.85 17.26 44.97 0.78 -4.07 14 17 C 0.08 2.74 10.78 84.67 0.91 3.66 14 18 N -0.46 -19.49 10.14 -183.30 -1.86 -21.35 14 19 H 0.27 15.45 8.31 -92.71 -0.77 14.68 14 20 H 0.05 2.15 7.20 -2.39 -0.02 2.13 14 21 H 0.07 2.61 7.31 -2.38 -0.02 2.59 14 22 H 0.21 4.96 7.95 -2.91 -0.02 4.94 14 23 H 0.17 2.47 8.11 -2.39 -0.02 2.45 14 24 H 0.18 5.21 8.06 -2.91 -0.02 5.18 14 Total: -1.00 -68.83 231.10 4.73 -64.10 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 1.17 Total: 3.29 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 3.59 Total: -8.53 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -3.47 Total: -94.37 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 1.55 Total: -7.77 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.88 Total: 43.29 kcal Total: -68.83 4.73 -64.10 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260187805.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.021 kcal (2) G-P(sol) polarization free energy of solvation -68.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds