Wall clock time and date at job start Mon Mar 30 2020 20:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36214 * 117.00214 * 2 1 4 4 C 1.34515 * 122.38433 * 0.02562 * 3 2 1 5 5 S 1.75742 * 110.32290 * 179.72945 * 4 3 2 6 6 C 1.75863 * 91.26797 * 0.02562 * 5 4 3 7 7 C 1.39726 * 125.39142 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99805 * 179.97438 * 7 6 5 9 9 C 1.39962 * 119.99664 * 359.97438 * 7 6 5 10 10 N 1.30996 * 120.00270 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99687 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47461 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47044 * 119.99963 * 11 9 7 14 14 H 1.48494 * 109.47392 * 240.00174 * 11 9 7 15 15 C 1.37617 * 122.38196 * 179.73380 * 3 2 1 16 16 O 1.35896 * 123.02108 * 0.23803 * 15 3 2 17 17 C 1.42901 * 117.00593 * 90.02103 * 16 15 3 18 18 H 1.09000 * 109.46813 * 300.00527 * 1 2 3 19 19 H 1.09002 * 109.46754 * 59.99786 * 1 2 3 20 20 H 1.08994 * 109.47080 * 179.97438 * 1 2 3 21 21 H 1.08001 * 124.83137 * 359.75018 * 4 3 2 22 22 H 0.97001 * 120.00193 * 180.02562 * 10 9 7 23 23 H 1.09005 * 109.46610 * 59.99827 * 17 16 15 24 24 H 1.08999 * 109.47352 * 179.97438 * 17 16 15 25 25 H 1.08999 * 109.46860 * 300.00412 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.3624 2.3713 0.0005 5 16 2.4699 3.7359 0.0081 6 6 3.8596 2.6581 0.0096 7 6 5.1971 3.0622 0.0147 8 1 5.9845 2.3231 0.0157 9 6 5.5163 4.4249 0.0186 10 7 4.5612 5.3214 0.0180 11 14 7.3044 4.9652 0.0261 12 1 8.1833 3.7682 0.0263 13 1 7.5801 5.7809 -1.1837 14 1 7.5714 5.7760 1.2412 15 6 3.4175 1.3427 0.0054 16 8 4.2617 0.2777 0.0064 17 6 4.6699 -0.2280 -1.2663 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 0.2854 2.4508 -0.0029 22 1 4.7824 6.2659 0.0203 23 1 5.1877 0.5557 -1.8194 24 1 5.3409 -1.0748 -1.1226 25 1 3.7928 -0.5500 -1.8276 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260441893.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:04 Heat of formation + Delta-G solvation = -83.670983 kcal Electronic energy + Delta-G solvation = -12334.364403 eV Core-core repulsion = 10018.072589 eV Total energy + Delta-G solvation = -2316.291814 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.41206 -38.52465 -36.27676 -34.72762 -30.70418 -28.52643 -27.89826 -26.15519 -23.22214 -20.62874 -19.92624 -17.98759 -17.49000 -17.02111 -16.61693 -16.05404 -15.65474 -15.35399 -14.83550 -14.05232 -13.93531 -13.43473 -13.14487 -12.85359 -12.62867 -12.35620 -12.03797 -11.97461 -11.82698 -11.20853 -10.98448 -10.36007 -9.36822 -8.90553 -8.32799 -6.56948 0.67337 1.37907 1.49781 1.52917 1.57727 1.96841 2.04971 2.16095 2.86991 2.92867 3.70949 4.42076 4.43473 4.57686 4.62748 4.71553 4.79518 4.84957 4.92167 5.24864 5.38826 5.72870 6.03486 6.19108 6.44285 6.69165 7.29788 7.96203 Molecular weight = 214.05amu Principal moments of inertia in cm(-1) A = 0.041314 B = 0.011539 C = 0.009233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.575592 B = 2426.072301 C = 3031.887053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.339 6.339 3 C 0.146 3.854 4 C -0.503 4.503 5 S 0.151 5.849 6 C 0.004 3.996 7 C -0.386 4.386 8 H 0.096 0.904 9 C 0.015 3.985 10 N -0.792 5.792 11 Si 1.013 2.987 12 H -0.256 1.256 13 H -0.255 1.255 14 H -0.256 1.256 15 C -0.207 4.207 16 O -0.319 6.319 17 C 0.027 3.973 18 H 0.049 0.951 19 H 0.049 0.951 20 H 0.119 0.881 21 H 0.146 0.854 22 H 0.313 0.687 23 H 0.027 0.973 24 H 0.102 0.898 25 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.106 -0.631 -1.605 1.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.254 6.254 3 C 0.092 3.908 4 C -0.637 4.637 5 S 0.406 5.594 6 C -0.117 4.117 7 C -0.420 4.420 8 H 0.114 0.886 9 C -0.204 4.204 10 N -0.418 5.418 11 Si 0.831 3.169 12 H -0.180 1.180 13 H -0.179 1.179 14 H -0.180 1.180 15 C -0.257 4.257 16 O -0.235 6.235 17 C -0.069 4.069 18 H 0.067 0.933 19 H 0.068 0.932 20 H 0.137 0.863 21 H 0.164 0.836 22 H 0.127 0.873 23 H 0.046 0.954 24 H 0.120 0.880 25 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.111 0.779 -1.445 1.646 hybrid contribution 0.112 -1.196 -0.315 1.242 sum 0.001 -0.417 -1.760 1.809 Atomic orbital electron populations 1.23082 0.77961 1.04313 1.01077 1.85984 1.22269 1.27312 1.89830 1.17741 0.91416 0.84081 0.97523 1.25152 1.03076 0.98366 1.37138 1.84112 0.92654 1.04685 1.77901 1.22181 0.98469 0.94141 0.96884 1.19449 0.91533 0.93786 1.37256 0.88575 1.27285 1.06448 0.95251 0.91459 1.68893 1.36840 1.04887 1.31178 0.84649 0.73337 0.79177 0.79740 1.17968 1.17907 1.18020 1.16769 0.85971 0.86453 1.36484 1.86049 1.63950 1.45588 1.27931 1.22990 0.98274 0.98289 0.87303 0.93267 0.93200 0.86280 0.83616 0.87326 0.95435 0.88007 0.95832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 9.93 113.37 1.13 2.16 15 2 O -0.34 -16.03 10.50 -88.69 -0.93 -16.96 15 3 C 0.15 7.75 6.62 21.27 0.14 7.89 15 4 C -0.50 -25.17 10.07 66.97 0.67 -24.50 15 5 S 0.15 7.80 20.24 -56.49 -1.14 6.65 15 6 C 0.00 0.24 6.20 22.76 0.14 0.38 15 7 C -0.39 -20.19 9.13 23.05 0.21 -19.98 15 8 H 0.10 4.96 7.78 -2.91 -0.02 4.94 15 9 C 0.02 0.70 5.50 85.24 0.47 1.17 15 10 N -0.79 -37.08 10.65 21.84 0.23 -36.85 15 11 Si 1.01 34.31 29.56 68.60 2.03 36.33 15 12 H -0.26 -8.67 7.11 99.48 0.71 -7.96 15 13 H -0.26 -8.07 7.11 99.48 0.71 -7.37 15 14 H -0.26 -8.19 7.11 99.48 0.71 -7.49 15 15 C -0.21 -11.63 5.86 22.25 0.13 -11.50 15 16 O -0.32 -17.06 10.21 -85.07 -0.87 -17.93 15 17 C 0.03 1.16 11.13 113.37 1.26 2.42 15 18 H 0.05 1.60 7.85 -2.39 -0.02 1.58 15 19 H 0.05 1.60 7.84 -2.39 -0.02 1.59 15 20 H 0.12 3.08 8.14 -2.39 -0.02 3.06 15 21 H 0.15 6.48 6.98 -2.91 -0.02 6.46 15 22 H 0.31 12.75 8.30 -92.71 -0.77 11.98 15 23 H 0.03 1.17 8.14 -2.38 -0.02 1.15 15 24 H 0.10 3.55 8.14 -2.39 -0.02 3.53 15 25 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 Total: -1.00 -62.92 238.23 4.66 -58.26 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.19 Total: 12.44 kcal Atomic # 6 Polarization: -46.10 SS G_CDS: 4.15 Total: -41.95 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.23 Total: -36.85 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.80 Total: -34.89 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.33 kcal Atomic # 16 Polarization: 7.80 SS G_CDS: -1.14 Total: 6.65 kcal Total: -62.92 4.66 -58.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260441893.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.416 kcal (2) G-P(sol) polarization free energy of solvation -62.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds