Wall clock time and date at job start Mon Mar 30 2020 20:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48503 * 109.47142 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.46985 * 120.00080 * 3 2 1 6 6 H 1.48495 * 109.47072 * 239.99865 * 3 2 1 7 7 C 1.40139 * 119.99511 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00192 * 3.71640 * 7 2 1 9 9 C 1.39906 * 119.99545 * 183.71259 * 7 2 1 10 10 C 1.39006 * 125.83787 * 185.94986 * 9 7 2 11 11 C 1.41486 * 106.33204 * 179.91017 * 10 9 7 12 12 C 1.46828 * 126.71290 * 180.13028 * 11 10 9 13 13 O 1.21300 * 120.00124 * 0.24682 * 12 11 10 14 14 C 1.50702 * 119.99703 * 180.24107 * 12 11 10 15 15 Cl 1.80300 * 109.46941 * 180.02562 * 14 12 11 16 16 C 1.38613 * 106.57139 * 0.35632 * 11 10 9 17 17 O 1.33663 * 108.76619 * 359.77126 * 16 11 10 18 18 H 0.96993 * 119.99861 * 174.83043 * 1 2 3 19 19 H 1.07998 * 126.83694 * 0.04738 * 10 9 7 20 20 H 1.09005 * 109.47411 * 299.99816 * 14 12 11 21 21 H 1.08994 * 109.47490 * 60.00248 * 14 12 11 22 22 H 1.07996 * 125.61400 * 179.74627 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0959 1.6964 1.2125 6 1 3.0959 1.6964 -1.2124 7 6 2.0087 -1.2137 0.0005 8 1 1.4704 -2.1480 -0.0597 9 6 3.4056 -1.2149 0.0790 10 6 4.2257 -2.3322 -0.0277 11 6 5.5542 -1.8650 0.1088 12 6 6.7784 -2.6745 0.0635 13 8 6.7070 -3.8729 -0.1104 14 6 8.1235 -2.0165 0.2328 15 17 9.4205 -3.2646 0.1287 16 6 5.4737 -0.4943 0.2990 17 8 4.1873 -0.1320 0.2773 18 1 -0.4849 -0.8366 -0.0757 19 1 3.9116 -3.3533 -0.1858 20 1 8.2678 -1.2765 -0.5545 21 1 8.1682 -1.5259 1.2051 22 1 6.3122 0.1711 0.4417 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260494824.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:08 Heat of formation + Delta-G solvation = -78.533730 kcal Electronic energy + Delta-G solvation = -11683.897545 eV Core-core repulsion = 9229.951698 eV Total energy + Delta-G solvation = -2453.945847 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 214.018 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.90039 -40.06790 -36.89943 -35.84166 -33.78791 -31.94471 -30.12125 -26.39150 -24.26682 -21.76496 -21.27420 -19.44935 -18.12979 -16.89157 -16.62435 -16.33935 -16.11031 -15.67633 -15.22761 -14.57470 -13.99600 -13.95539 -13.50637 -12.96106 -12.87432 -11.94975 -11.92231 -11.55216 -11.46408 -11.36885 -10.80268 -10.53683 -9.65328 -9.44232 -6.70458 0.24676 1.08260 1.13772 1.39489 1.65975 1.73534 2.21392 2.22974 2.68932 2.96310 3.00126 4.03480 4.18043 4.26870 4.40464 4.80579 5.03618 5.23771 5.34280 5.58975 5.89376 6.10211 6.35488 6.53006 6.76245 7.86256 Molecular weight = 214.02amu Principal moments of inertia in cm(-1) A = 0.075833 B = 0.007361 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.144520 B = 3802.854154 C = 4151.066815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.008 3.992 3 Si 1.108 2.892 4 H -0.272 1.272 5 H -0.246 1.246 6 H -0.259 1.259 7 C -0.526 4.526 8 H 0.070 0.930 9 C 0.159 3.841 10 C -0.368 4.368 11 C -0.233 4.233 12 C 0.414 3.586 13 O -0.490 6.490 14 C -0.070 4.070 15 Cl -0.173 7.173 16 C -0.060 4.060 17 O -0.200 6.200 18 H 0.280 0.720 19 H 0.101 0.899 20 H 0.163 0.837 21 H 0.163 0.837 22 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.067 5.010 1.138 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.207 4.207 3 Si 0.927 3.073 4 H -0.198 1.198 5 H -0.171 1.171 6 H -0.184 1.184 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.109 3.891 10 C -0.389 4.389 11 C -0.236 4.236 12 C 0.295 3.705 13 O -0.367 6.367 14 C -0.132 4.132 15 Cl -0.147 7.147 16 C -0.126 4.126 17 O -0.100 6.100 18 H 0.091 0.909 19 H 0.119 0.881 20 H 0.181 0.819 21 H 0.181 0.819 22 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 13.724 6.124 1.141 15.072 hybrid contribution -0.585 -2.782 -0.190 2.850 sum 13.139 3.342 0.951 13.590 Atomic orbital electron populations 1.70620 1.08204 1.32658 1.33761 1.28630 0.96104 1.07160 0.88832 0.83035 0.74051 0.69536 0.80686 1.19772 1.17052 1.18412 1.19782 0.88788 0.96707 1.50274 0.91165 1.19570 0.91011 0.83245 0.95263 1.21329 0.92436 0.97561 1.27570 1.20763 0.94052 0.95321 1.13442 1.22097 0.89899 0.87757 0.70796 1.90532 1.89754 1.18343 1.38111 1.25001 0.84276 0.93201 1.10711 1.98728 1.54914 1.61774 1.99260 1.25322 0.84744 0.94261 1.08253 1.83756 1.18149 1.35413 1.72653 0.90876 0.88053 0.81899 0.81917 0.72757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.29 13.65 21.87 0.30 -43.99 14 2 C 0.01 0.40 5.52 85.31 0.47 0.87 14 3 Si 1.11 45.23 25.94 68.60 1.78 47.01 14 4 H -0.27 -10.55 7.11 99.48 0.71 -9.84 14 5 H -0.25 -9.27 6.79 99.48 0.68 -8.60 14 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 14 7 C -0.53 -29.00 9.75 23.14 0.23 -28.78 14 8 H 0.07 4.13 8.06 -2.91 -0.02 4.10 14 9 C 0.16 8.10 6.48 22.86 0.15 8.25 14 10 C -0.37 -18.39 10.74 23.25 0.25 -18.14 14 11 C -0.23 -9.13 6.13 -20.14 -0.12 -9.26 14 12 C 0.41 13.97 7.18 27.94 0.20 14.17 14 13 O -0.49 -20.70 16.59 -3.09 -0.05 -20.76 14 14 C -0.07 -1.40 6.60 71.24 0.47 -0.93 14 15 Cl -0.17 -4.33 28.37 -2.72 -0.08 -4.40 14 16 C -0.06 -1.96 11.66 67.91 0.79 -1.17 14 17 O -0.20 -8.58 5.96 -3.69 -0.02 -8.61 14 18 H 0.28 14.87 8.72 -92.71 -0.81 14.06 14 19 H 0.10 5.40 8.06 -2.91 -0.02 5.38 14 20 H 0.16 2.10 8.14 -2.38 -0.02 2.08 14 21 H 0.16 2.10 8.14 -2.39 -0.02 2.08 14 22 H 0.26 4.47 8.00 -2.91 -0.02 4.45 14 Total: -1.00 -66.85 224.70 5.53 -61.32 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.17 Total: 4.40 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 2.43 Total: -34.98 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.30 Total: -43.99 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.07 Total: -29.36 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.78 Total: 47.01 kcal Atomic # 17 Polarization: -4.33 SS G_CDS: -0.08 Total: -4.40 kcal Total: -66.85 5.53 -61.32 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260494824.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.216 kcal (2) G-P(sol) polarization free energy of solvation -66.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds