Wall clock time and date at job start Mon Mar 30 2020 20:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35553 * 117.00014 * 2 1 4 4 N 1.29512 * 124.93852 * 180.30359 * 3 2 1 5 5 C 1.32081 * 116.91807 * 180.21294 * 4 3 2 6 6 C 1.50702 * 122.71891 * 179.79788 * 5 4 3 7 7 H 1.09000 * 109.47347 * 64.70724 * 6 5 4 8 8 N 1.46899 * 109.47229 * 184.70805 * 6 5 4 9 9 C 1.50701 * 109.47150 * 304.70740 * 6 5 4 10 10 H 1.08003 * 119.99897 * 354.79107 * 9 6 5 11 11 C 1.37875 * 120.00212 * 174.79456 * 9 6 5 12 12 N 1.31517 * 120.00018 * 164.43232 * 11 9 6 13 13 Si 1.86794 * 119.99875 * 344.43480 * 11 9 6 14 14 H 1.48508 * 109.47096 * 180.02562 * 13 11 9 15 15 H 1.48497 * 109.47341 * 59.99927 * 13 11 9 16 16 H 1.48501 * 109.47257 * 299.99817 * 13 11 9 17 17 C 1.33371 * 114.56083 * 359.52573 * 5 4 3 18 18 S 1.70962 * 124.94009 * 0.02946 * 3 2 1 19 19 H 1.09000 * 109.46861 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.46679 * 299.99814 * 1 2 3 21 21 H 1.08997 * 109.47330 * 59.99466 * 1 2 3 22 22 H 1.00900 * 110.99886 * 54.15723 * 8 6 5 23 23 H 1.00900 * 111.00036 * 178.11131 * 8 6 5 24 24 H 0.97001 * 119.99684 * 354.86532 * 12 11 9 25 25 H 1.08009 * 125.97172 * 180.27313 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 7 3.3271 1.3867 -0.0056 5 6 3.7567 2.6356 -0.0003 6 6 5.2206 2.9935 -0.0013 7 1 5.6761 2.6579 -0.9330 8 7 5.3687 4.4501 0.1193 9 6 5.9029 2.3212 1.1621 10 1 5.3203 1.7663 1.8826 11 6 7.2709 2.4145 1.3068 12 7 7.8334 2.1046 2.4545 13 14 8.3252 2.9813 -0.1272 14 1 9.7525 2.9951 0.2828 15 1 7.9134 4.3487 -0.5343 16 1 8.1481 2.0501 -1.2703 17 6 2.7899 3.5544 0.0003 18 16 1.2402 2.7165 0.0007 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3632 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 4.8728 4.7984 0.9261 23 1 6.3423 4.7131 0.1519 24 1 7.2816 1.8823 3.2206 25 1 2.9322 4.6251 0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260589767.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:15 Heat of formation + Delta-G solvation = -7.034702 kcal Electronic energy + Delta-G solvation = -12113.172953 eV Core-core repulsion = 9832.497089 eV Total energy + Delta-G solvation = -2280.675864 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.12402 -39.52851 -36.46588 -33.91532 -30.52037 -28.53240 -28.11355 -25.60425 -23.61484 -20.69865 -19.94057 -19.73493 -17.83043 -17.36322 -16.97953 -16.19780 -15.62572 -15.08881 -14.86534 -14.32193 -14.18794 -13.75101 -13.65935 -13.10733 -12.50822 -12.24200 -11.98342 -11.86738 -11.39575 -10.68391 -10.52535 -10.27017 -9.60553 -9.37568 -8.70892 -6.47572 -0.12655 0.06162 0.62602 1.42627 1.52339 1.68908 1.72987 1.92166 2.43447 2.99683 3.68748 4.14964 4.20366 4.28244 4.45670 4.57094 4.58507 5.03387 5.15214 5.60066 5.69653 5.93766 6.31991 6.46348 6.74727 7.00449 7.32027 8.54003 Molecular weight = 214.05amu Principal moments of inertia in cm(-1) A = 0.049814 B = 0.008950 C = 0.008222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.958511 B = 3127.907085 C = 3404.885286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.299 6.299 3 C 0.218 3.782 4 N -0.534 5.534 5 C 0.109 3.891 6 C 0.250 3.750 7 H 0.047 0.953 8 N -0.835 5.835 9 C -0.615 4.615 10 H 0.007 0.993 11 C -0.017 4.017 12 N -0.930 5.930 13 Si 1.087 2.913 14 H -0.286 1.286 15 H -0.227 1.227 16 H -0.276 1.276 17 C -0.267 4.267 18 S 0.132 5.868 19 H 0.144 0.856 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.334 0.666 23 H 0.338 0.662 24 H 0.251 0.749 25 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.773 3.080 -6.836 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.208 6.208 3 C -0.099 4.099 4 N -0.264 5.264 5 C -0.019 4.019 6 C 0.137 3.863 7 H 0.065 0.935 8 N -0.366 5.366 9 C -0.655 4.655 10 H 0.026 0.974 11 C -0.216 4.216 12 N -0.565 5.565 13 Si 0.907 3.093 14 H -0.211 1.211 15 H -0.151 1.151 16 H -0.201 1.201 17 C -0.405 4.405 18 S 0.379 5.621 19 H 0.162 0.838 20 H 0.092 0.908 21 H 0.098 0.902 22 H 0.146 0.854 23 H 0.154 0.846 24 H 0.060 0.940 25 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -15.299 2.920 -8.025 17.521 hybrid contribution -0.238 -0.920 2.064 2.272 sum -15.537 2.000 -5.961 16.761 Atomic orbital electron populations 1.23801 0.73400 1.07667 1.03527 1.85884 1.24687 1.21645 1.88551 1.25397 0.91531 0.91225 1.01711 1.65596 1.12525 1.25661 1.22596 1.19990 0.98424 0.84851 0.98660 1.17577 0.86131 0.87068 0.95561 0.93506 1.59659 1.18063 1.11512 1.47405 1.22587 0.94804 1.37028 1.11080 0.97415 1.27363 0.97561 0.94041 1.02630 1.70955 1.39020 1.45036 1.01498 0.83518 0.74531 0.79092 0.72115 1.21143 1.15096 1.20148 1.26695 0.92122 1.05570 1.16126 1.83134 1.09478 0.97178 1.72264 0.83815 0.90774 0.90194 0.85438 0.84632 0.94037 0.78068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 10.24 113.37 1.16 1.35 15 2 O -0.30 -9.77 10.56 -88.58 -0.94 -10.70 15 3 C 0.22 8.24 8.30 130.58 1.08 9.32 15 4 N -0.53 -25.65 10.44 -306.64 -3.20 -28.85 15 5 C 0.11 5.01 5.98 41.42 0.25 5.26 15 6 C 0.25 12.32 2.78 43.42 0.12 12.45 15 7 H 0.05 2.39 6.86 -2.39 -0.02 2.38 15 8 N -0.83 -34.46 8.44 -174.95 -1.48 -35.93 15 9 C -0.62 -36.43 8.95 25.60 0.23 -36.20 15 10 H 0.01 0.51 7.99 -2.91 -0.02 0.49 15 11 C -0.02 -1.00 5.38 84.65 0.46 -0.55 15 12 N -0.93 -59.05 13.70 21.45 0.29 -58.75 15 13 Si 1.09 49.52 26.42 68.60 1.81 51.34 15 14 H -0.29 -13.06 7.11 99.48 0.71 -12.36 15 15 H -0.23 -8.65 5.69 99.48 0.57 -8.08 15 16 H -0.28 -12.30 7.11 99.48 0.71 -11.60 15 17 C -0.27 -9.58 10.25 66.72 0.68 -8.90 15 18 S 0.13 3.75 21.85 -56.49 -1.23 2.52 15 19 H 0.14 1.64 8.14 -2.39 -0.02 1.62 15 20 H 0.07 1.13 8.02 -2.39 -0.02 1.11 15 21 H 0.08 1.13 8.02 -2.39 -0.02 1.11 15 22 H 0.33 13.06 8.18 -89.69 -0.73 12.33 15 23 H 0.34 13.89 5.49 -89.69 -0.49 13.39 15 24 H 0.25 16.37 8.73 -92.71 -0.81 15.56 15 25 H 0.20 6.21 7.21 -2.91 -0.02 6.19 15 Total: -1.00 -74.57 231.83 -0.93 -75.51 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.17 Total: 22.14 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 3.98 Total: -17.26 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -4.39 Total: -123.54 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.94 Total: -10.70 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 1.81 Total: 51.34 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.23 Total: 2.52 kcal Total: -74.57 -0.93 -75.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260589767.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.473 kcal (2) G-P(sol) polarization free energy of solvation -74.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds