Wall clock time and date at job start Mon Mar 30 2020 20:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35326 * 117.00170 * 2 1 4 4 S 1.76200 * 126.08443 * 0.02562 * 3 2 1 5 5 C 1.75958 * 90.33405 * 179.97438 * 4 3 2 6 6 C 1.50704 * 124.82536 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.46874 * 270.04678 * 6 5 4 8 8 N 1.28611 * 110.35418 * 0.02562 * 5 4 3 9 9 C 1.33537 * 117.42292 * 359.97438 * 8 5 4 10 10 C 1.40864 * 122.96668 * 179.97438 * 9 8 5 11 11 H 1.08004 * 120.00387 * 174.00075 * 10 9 8 12 12 C 1.39577 * 119.99950 * 353.99121 * 10 9 8 13 13 N 1.31177 * 120.00203 * 6.17773 * 12 10 9 14 14 Si 1.86807 * 119.99981 * 186.17889 * 12 10 9 15 15 H 1.48507 * 109.46984 * 94.98461 * 14 12 10 16 16 H 1.48497 * 109.46987 * 214.98094 * 14 12 10 17 17 H 1.48496 * 109.47180 * 334.98719 * 14 12 10 18 18 H 1.08999 * 109.47165 * 60.00681 * 1 2 3 19 19 H 1.09002 * 109.47042 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47653 * 300.00349 * 1 2 3 21 21 H 1.08994 * 109.46752 * 30.04166 * 6 5 4 22 22 H 1.08996 * 109.47045 * 150.04537 * 6 5 4 23 23 H 1.00907 * 110.99482 * 180.02562 * 7 6 5 24 24 H 1.00900 * 111.00309 * 303.94920 * 7 6 5 25 25 H 0.97006 * 120.00355 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0433 1.2057 0.0000 4 16 1.2458 2.7769 0.0006 5 6 2.8101 3.5825 0.0010 6 6 3.0088 5.0764 0.0010 7 7 3.0726 5.5619 -1.3840 8 7 3.7599 2.7153 0.0001 9 6 3.4148 1.4253 -0.0004 10 6 4.3584 0.3794 -0.0019 11 1 4.0297 -0.6447 0.0956 12 6 5.7184 0.6667 -0.1295 13 7 6.1287 1.9126 -0.1262 14 14 6.9541 -0.7232 -0.3051 15 1 7.2312 -0.9602 -1.7448 16 1 8.2150 -0.3550 0.3875 17 1 6.3984 -1.9593 0.3020 18 1 -0.3633 0.5137 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 2.1748 5.5538 0.5153 22 1 3.9392 5.3191 0.5143 23 1 3.2060 6.5617 -1.4108 24 1 3.7973 5.0867 -1.9008 25 1 7.0739 2.1122 -0.2145 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260778122.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:31 Heat of formation + Delta-G solvation = -17.933176 kcal Electronic energy + Delta-G solvation = -12157.117524 eV Core-core repulsion = 9875.969067 eV Total energy + Delta-G solvation = -2281.148458 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95478 -38.69177 -35.81036 -34.66834 -30.88206 -28.31038 -27.43275 -25.96127 -23.07866 -20.74287 -19.91254 -17.76683 -17.53766 -17.00344 -16.50674 -16.35558 -15.66151 -15.23846 -14.75916 -14.07979 -13.86814 -13.46144 -13.23884 -12.89018 -12.78540 -12.43291 -12.10861 -12.04059 -11.35940 -11.14131 -10.04886 -9.66237 -9.58304 -8.98437 -8.42530 -6.21251 0.34606 0.85426 1.19516 1.39468 1.40420 1.53975 2.26300 2.32756 2.88166 3.41678 3.58708 3.89719 4.36291 4.39078 4.43944 4.60359 4.63073 5.01577 5.28126 5.45545 6.06351 6.24148 6.31121 6.62170 6.75700 6.97805 7.63773 8.48289 Molecular weight = 214.05amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.013553 C = 0.009097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.951258 B = 2065.419525 C = 3077.105519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C -0.217 4.217 4 S -0.038 6.038 5 C 0.056 3.944 6 C 0.156 3.844 7 N -0.842 5.842 8 N -0.411 5.411 9 C 0.165 3.835 10 C -0.464 4.464 11 H 0.074 0.926 12 C 0.028 3.972 13 N -0.789 5.789 14 Si 0.988 3.012 15 H -0.264 1.264 16 H -0.264 1.264 17 H -0.262 1.262 18 H 0.046 0.954 19 H 0.121 0.879 20 H 0.047 0.953 21 H 0.107 0.893 22 H 0.054 0.946 23 H 0.361 0.639 24 H 0.342 0.658 25 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 3.697 -0.242 5.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.217 6.217 3 C -0.379 4.379 4 S 0.208 5.792 5 C -0.227 4.227 6 C 0.022 3.978 7 N -0.375 5.375 8 N -0.126 5.126 9 C 0.041 3.959 10 C -0.498 4.498 11 H 0.092 0.908 12 C -0.189 4.189 13 N -0.415 5.415 14 Si 0.808 3.192 15 H -0.189 1.189 16 H -0.188 1.188 17 H -0.186 1.186 18 H 0.064 0.936 19 H 0.140 0.860 20 H 0.066 0.934 21 H 0.125 0.875 22 H 0.072 0.928 23 H 0.176 0.824 24 H 0.154 0.846 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.269 3.889 -0.295 6.556 hybrid contribution 1.671 -0.925 0.182 1.919 sum -3.598 2.964 -0.113 4.663 Atomic orbital electron populations 1.23175 0.78077 1.04670 1.00735 1.85555 1.21034 1.23252 1.91851 1.24568 0.93538 0.86603 1.33221 1.83541 1.15075 1.01090 1.79543 1.27869 0.88019 1.00581 1.06257 1.20160 1.01901 0.84251 0.91504 1.58667 1.56078 1.10688 1.12068 1.66924 1.32062 1.00810 1.12850 1.17975 0.88595 0.89695 0.99586 1.18967 0.91188 0.92856 1.46779 0.90780 1.26780 1.00564 0.99228 0.92373 1.70237 1.16847 1.20426 1.33954 0.85116 0.76812 0.77986 0.79249 1.18889 1.18811 1.18646 0.93551 0.86045 0.93440 0.87537 0.92790 0.82394 0.84565 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 10.31 113.37 1.17 2.22 15 2 O -0.30 -14.95 10.34 -86.15 -0.89 -15.84 15 3 C -0.22 -11.59 7.36 67.98 0.50 -11.09 15 4 S -0.04 -1.66 22.28 -56.49 -1.26 -2.92 15 5 C 0.06 2.58 7.07 88.58 0.63 3.21 15 6 C 0.16 5.35 7.39 85.56 0.63 5.98 15 7 N -0.84 -25.52 9.61 -190.01 -1.83 -27.34 15 8 N -0.41 -22.61 8.38 -179.80 -1.51 -24.12 15 9 C 0.16 9.68 6.50 39.68 0.26 9.94 15 10 C -0.46 -27.47 9.12 23.24 0.21 -27.26 15 11 H 0.07 4.38 7.79 -2.91 -0.02 4.35 15 12 C 0.03 1.52 5.48 85.11 0.47 1.99 15 13 N -0.79 -43.49 11.72 21.78 0.26 -43.23 15 14 Si 0.99 40.96 29.56 68.60 2.03 42.98 15 15 H -0.26 -10.55 7.11 99.48 0.71 -9.85 15 16 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 17 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 18 H 0.05 1.57 8.08 -2.39 -0.02 1.55 15 19 H 0.12 3.33 8.14 -2.39 -0.02 3.31 15 20 H 0.05 1.58 8.08 -2.39 -0.02 1.56 15 21 H 0.11 3.04 8.14 -2.39 -0.02 3.02 15 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 23 H 0.36 8.00 9.08 -89.69 -0.81 7.18 15 24 H 0.34 11.49 8.99 -89.69 -0.81 10.69 15 25 H 0.28 13.85 8.30 -92.70 -0.77 13.08 15 Total: -1.00 -68.57 241.20 0.28 -68.29 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -0.39 Total: 17.20 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 3.86 Total: -15.02 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -3.08 Total: -94.69 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.89 Total: -15.84 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -1.26 Total: -2.92 kcal Total: -68.57 0.28 -68.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260778122.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.359 kcal (2) G-P(sol) polarization free energy of solvation -68.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds