Wall clock time and date at job start Mon Mar 30 2020 20:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39861 * 126.05214 * 2 1 4 4 N 1.30829 * 108.22225 * 180.02562 * 3 2 1 5 5 N 1.40081 * 108.23548 * 359.74638 * 4 3 2 6 6 C 1.46503 * 126.03763 * 180.26885 * 5 4 3 7 7 H 1.09004 * 109.47220 * 180.17816 * 6 5 4 8 8 C 1.52996 * 109.47164 * 300.17683 * 6 5 4 9 9 C 1.50709 * 109.47076 * 60.17973 * 6 5 4 10 10 H 1.07999 * 119.99420 * 0.02562 * 9 6 5 11 11 C 1.37874 * 119.99945 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00074 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99922 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.47068 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46942 * 119.99815 * 13 11 9 16 16 H 1.48494 * 109.47182 * 240.00121 * 13 11 9 17 17 C 1.34983 * 107.93076 * 0.42226 * 5 4 3 18 18 Cl 1.73599 * 126.14791 * 179.84917 * 17 5 4 19 19 H 1.09002 * 109.47201 * 269.97250 * 1 2 3 20 20 H 1.09000 * 109.47504 * 29.97384 * 1 2 3 21 21 H 1.09003 * 109.47530 * 149.97509 * 1 2 3 22 22 H 1.08004 * 125.89266 * 359.97438 * 3 2 1 23 23 H 1.09001 * 109.47016 * 179.97438 * 8 6 5 24 24 H 1.08995 * 109.47419 * 300.00265 * 8 6 5 25 25 H 1.09004 * 109.46748 * 60.00724 * 8 6 5 26 26 H 0.96997 * 119.99877 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3301 1.1307 0.0000 4 7 3.5755 0.7302 -0.0006 5 7 3.5854 -0.6706 0.0050 6 6 4.7762 -1.5241 0.0118 7 1 4.4728 -2.5711 0.0119 8 6 5.6168 -1.2367 -1.2338 9 6 5.5924 -1.2376 1.2459 10 1 5.2574 -0.4945 1.9544 11 6 6.7662 -1.9250 1.4710 12 7 7.1739 -2.8303 0.6085 13 14 7.7783 -1.5694 3.0002 14 1 7.1078 -0.5157 3.8036 15 1 7.9008 -2.8071 3.8116 16 1 9.1306 -1.1031 2.6015 17 6 2.3042 -1.0953 -0.0006 18 17 1.7732 -2.7481 -0.0009 19 1 -0.3634 -0.0005 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3634 -0.8898 -0.5142 22 1 1.9953 2.1576 -0.0004 23 1 6.5030 -1.8714 -1.2284 24 1 5.0265 -1.4439 -2.1263 25 1 5.9203 -0.1898 -1.2337 26 1 7.9995 -3.3141 0.7670 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260890272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:41 Heat of formation + Delta-G solvation = 57.394457 kcal Electronic energy + Delta-G solvation = -12276.731865 eV Core-core repulsion = 9996.806153 eV Total energy + Delta-G solvation = -2279.925713 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.52477 -36.26540 -34.76158 -32.15118 -30.84431 -28.97150 -25.60640 -25.29868 -22.33435 -19.91745 -19.55097 -16.62651 -16.16747 -14.69034 -14.53776 -13.76825 -13.41630 -12.89971 -12.74403 -12.42688 -11.87344 -11.64933 -11.46484 -11.24696 -10.99045 -10.89848 -10.72224 -10.39888 -10.23671 -9.88781 -9.38159 -8.62414 -8.44198 -7.65744 -6.24951 -4.32418 2.16054 2.48260 3.20903 3.27096 3.28681 3.34673 3.65085 4.29627 5.05467 5.24066 5.58119 5.80464 6.00973 6.09762 6.28409 6.46107 6.54866 6.71758 6.74741 7.08862 7.25697 7.58691 7.64509 7.89861 7.94256 8.43217 8.73198 9.33730 10.81130 Molecular weight = 214.06amu Principal moments of inertia in cm(-1) A = 0.038478 B = 0.009959 C = 0.009293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.504770 B = 2810.956227 C = 3012.391521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.248 4.248 3 C 0.024 3.976 4 N -0.260 5.260 5 N -0.312 5.312 6 C 0.271 3.729 7 H 0.067 0.933 8 C -0.146 4.146 9 C -0.522 4.522 10 H 0.068 0.932 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.908 3.092 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.280 1.280 17 C 0.119 3.881 18 Cl -0.022 7.022 19 H 0.056 0.944 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.177 0.823 23 H 0.102 0.898 24 H 0.014 0.986 25 H 0.045 0.955 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 2.176 -1.647 9.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.261 4.261 3 C -0.160 4.160 4 N -0.084 5.084 5 N -0.095 5.095 6 C 0.173 3.827 7 H 0.084 0.916 8 C -0.205 4.205 9 C -0.561 4.561 10 H 0.086 0.914 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.735 3.265 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.206 1.206 17 C -0.038 4.038 18 Cl 0.005 6.995 19 H 0.075 0.925 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.194 0.806 23 H 0.120 0.880 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.843 2.154 -1.680 8.305 hybrid contribution -0.242 -0.348 0.781 0.889 sum -8.086 1.805 -0.899 8.333 Atomic orbital electron populations 1.19975 0.89575 1.01619 1.01119 1.19564 0.96616 0.90474 1.19461 1.23494 0.90282 0.98948 1.03269 1.77509 1.19885 0.88895 1.22098 1.49830 1.04981 1.04352 1.50351 1.19500 0.78513 0.87963 0.96743 0.91590 1.22074 1.01873 1.02228 0.94309 1.21223 1.06665 1.22789 1.05396 0.91428 1.24881 0.96978 0.94513 0.97296 1.69860 1.23217 1.24322 1.35416 0.86262 0.79751 0.78301 0.82156 1.19577 1.20731 1.20628 1.21493 0.87635 0.86645 1.07999 1.98343 1.88373 1.15542 1.97194 0.92528 0.92166 0.92460 0.80553 0.87963 0.96658 0.93608 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.20 36.00 0.37 -0.50 15 2 C -0.25 -4.45 6.10 -105.01 -0.64 -5.09 15 3 C 0.02 0.43 11.96 -17.37 -0.21 0.23 15 4 N -0.26 -5.88 12.41 30.62 0.38 -5.50 15 5 N -0.31 -7.32 3.27 -52.80 -0.17 -7.50 15 6 C 0.27 6.90 3.05 -69.08 -0.21 6.69 15 7 H 0.07 1.74 7.26 -51.93 -0.38 1.36 15 8 C -0.15 -3.59 9.23 37.16 0.34 -3.25 15 9 C -0.52 -14.43 8.77 -34.44 -0.30 -14.74 15 10 H 0.07 1.95 7.81 -52.49 -0.41 1.54 15 11 C 0.07 1.78 5.30 -17.82 -0.09 1.69 15 12 N -0.89 -24.34 11.32 55.43 0.63 -23.72 15 13 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 15 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 17 C 0.12 2.45 7.45 -17.15 -0.13 2.33 15 18 Cl -0.02 -0.40 27.99 -51.86 -1.45 -1.85 15 19 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.06 0.73 7.91 -51.93 -0.41 0.32 15 22 H 0.18 2.48 8.06 -52.48 -0.42 2.06 15 23 H 0.10 2.64 6.07 -51.93 -0.32 2.33 15 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 15 25 H 0.04 1.13 8.14 -51.93 -0.42 0.71 15 26 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 LS Contribution 245.91 15.07 3.71 3.71 Total: -1.00 -28.55 245.91 -5.57 -34.11 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -2.76 Total: -2.74 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -0.87 Total: -12.65 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.84 Total: -36.71 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.45 Total: -1.85 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.55 -5.57 -34.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260890272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.508 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds