Wall clock time and date at job start Mon Mar 30 2020 20:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39861 * 126.05214 * 2 1 4 4 N 1.30829 * 108.22225 * 180.02562 * 3 2 1 5 5 N 1.40081 * 108.23548 * 359.74638 * 4 3 2 6 6 C 1.46503 * 126.03763 * 180.26885 * 5 4 3 7 7 H 1.09004 * 109.47220 * 180.17816 * 6 5 4 8 8 C 1.52996 * 109.47164 * 300.17683 * 6 5 4 9 9 C 1.50709 * 109.47076 * 60.17973 * 6 5 4 10 10 H 1.07999 * 119.99420 * 0.02562 * 9 6 5 11 11 C 1.37874 * 119.99945 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00074 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99922 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.47068 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46942 * 119.99815 * 13 11 9 16 16 H 1.48494 * 109.47182 * 240.00121 * 13 11 9 17 17 C 1.34983 * 107.93076 * 0.42226 * 5 4 3 18 18 Cl 1.73599 * 126.14791 * 179.84917 * 17 5 4 19 19 H 1.09002 * 109.47201 * 269.97250 * 1 2 3 20 20 H 1.09000 * 109.47504 * 29.97384 * 1 2 3 21 21 H 1.09003 * 109.47530 * 149.97509 * 1 2 3 22 22 H 1.08004 * 125.89266 * 359.97438 * 3 2 1 23 23 H 1.09001 * 109.47016 * 179.97438 * 8 6 5 24 24 H 1.08995 * 109.47419 * 300.00265 * 8 6 5 25 25 H 1.09004 * 109.46748 * 60.00724 * 8 6 5 26 26 H 0.96997 * 119.99877 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3301 1.1307 0.0000 4 7 3.5755 0.7302 -0.0006 5 7 3.5854 -0.6706 0.0050 6 6 4.7762 -1.5241 0.0118 7 1 4.4728 -2.5711 0.0119 8 6 5.6168 -1.2367 -1.2338 9 6 5.5924 -1.2376 1.2459 10 1 5.2574 -0.4945 1.9544 11 6 6.7662 -1.9250 1.4710 12 7 7.1739 -2.8303 0.6085 13 14 7.7783 -1.5694 3.0002 14 1 7.1078 -0.5157 3.8036 15 1 7.9008 -2.8071 3.8116 16 1 9.1306 -1.1031 2.6015 17 6 2.3042 -1.0953 -0.0006 18 17 1.7732 -2.7481 -0.0009 19 1 -0.3634 -0.0005 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3634 -0.8898 -0.5142 22 1 1.9953 2.1576 -0.0004 23 1 6.5030 -1.8714 -1.2284 24 1 5.0265 -1.4439 -2.1263 25 1 5.9203 -0.1898 -1.2337 26 1 7.9995 -3.3141 0.7670 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260890272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:40 Heat of formation + Delta-G solvation = 40.626824 kcal Electronic energy + Delta-G solvation = -12277.458964 eV Core-core repulsion = 9996.806153 eV Total energy + Delta-G solvation = -2280.652812 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.07669 -37.73839 -36.65265 -33.93085 -32.34630 -30.71964 -27.47113 -26.88418 -24.06105 -21.55015 -21.15026 -18.53404 -17.98396 -16.55520 -16.11887 -15.37306 -15.03653 -14.39541 -14.35369 -13.81447 -13.49894 -13.16808 -13.03623 -12.90303 -12.73930 -12.66661 -12.48010 -12.33052 -12.04211 -11.50665 -11.25313 -10.66434 -10.12113 -9.16609 -8.29364 -6.44900 0.65259 0.91528 1.36669 1.38764 1.50740 1.85148 1.98853 2.36014 2.99142 3.82125 4.32649 4.38813 4.59745 4.70814 4.74542 4.86321 5.01603 5.16299 5.23467 5.31168 5.52031 5.63812 5.80868 5.98561 6.09403 6.60497 6.87680 7.24676 8.75809 Molecular weight = 214.06amu Principal moments of inertia in cm(-1) A = 0.038478 B = 0.009959 C = 0.009293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.504770 B = 2810.956227 C = 3012.391521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.235 4.235 3 C 0.035 3.965 4 N -0.305 5.305 5 N -0.342 5.342 6 C 0.277 3.723 7 H 0.050 0.950 8 C -0.132 4.132 9 C -0.543 4.543 10 H 0.047 0.953 11 C 0.027 3.973 12 N -0.909 5.909 13 Si 0.968 3.032 14 H -0.277 1.277 15 H -0.272 1.272 16 H -0.272 1.272 17 C 0.094 3.906 18 Cl -0.009 7.009 19 H 0.069 0.931 20 H 0.088 0.912 21 H 0.062 0.938 22 H 0.221 0.779 23 H 0.086 0.914 24 H 0.028 0.972 25 H 0.034 0.966 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 2.906 -1.317 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.249 4.249 3 C -0.149 4.149 4 N -0.129 5.129 5 N -0.126 5.126 6 C 0.178 3.822 7 H 0.068 0.932 8 C -0.191 4.191 9 C -0.581 4.581 10 H 0.065 0.935 11 C -0.174 4.174 12 N -0.547 5.547 13 Si 0.792 3.208 14 H -0.202 1.202 15 H -0.197 1.197 16 H -0.197 1.197 17 C -0.061 4.061 18 Cl 0.019 6.981 19 H 0.088 0.912 20 H 0.107 0.893 21 H 0.081 0.919 22 H 0.238 0.762 23 H 0.104 0.896 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.074 2.874 -1.361 9.615 hybrid contribution 0.010 -0.543 0.657 0.852 sum -9.064 2.331 -0.704 9.385 Atomic orbital electron populations 1.20115 0.86089 1.03376 1.02492 1.20173 0.98756 0.89249 1.16692 1.24304 0.89014 1.01036 1.00521 1.77437 1.22500 0.88748 1.24189 1.49536 1.05222 1.04668 1.53172 1.19108 0.79381 0.87680 0.96052 0.93193 1.21878 1.01342 1.00973 0.94873 1.21321 1.07766 1.22821 1.06207 0.93489 1.25598 0.97692 0.94197 0.99914 1.69933 1.23614 1.24579 1.36538 0.85357 0.78341 0.78191 0.78865 1.20162 1.19676 1.19740 1.22009 0.87199 0.88180 1.08703 1.98337 1.87994 1.14619 1.97166 0.91197 0.89285 0.91902 0.76217 0.89573 0.95303 0.94660 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.46 10.20 71.23 0.73 -0.73 15 2 C -0.24 -7.90 6.10 -20.11 -0.12 -8.02 15 3 C 0.04 1.21 11.96 85.24 1.02 2.23 15 4 N -0.31 -13.68 12.41 -57.03 -0.71 -14.39 15 5 N -0.34 -16.15 3.27 -320.98 -1.05 -17.20 15 6 C 0.28 14.44 3.05 44.25 0.14 14.57 15 7 H 0.05 2.72 7.26 -2.38 -0.02 2.70 15 8 C -0.13 -6.62 9.23 71.98 0.66 -5.96 15 9 C -0.54 -30.64 8.77 25.60 0.22 -30.41 15 10 H 0.05 2.78 7.81 -2.91 -0.02 2.76 15 11 C 0.03 1.47 5.30 84.65 0.45 1.92 15 12 N -0.91 -50.05 11.32 21.45 0.24 -49.81 15 13 Si 0.97 43.47 29.54 68.60 2.03 45.49 15 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 16 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 17 C 0.09 3.80 7.45 83.57 0.62 4.43 15 18 Cl -0.01 -0.32 27.99 -2.72 -0.08 -0.40 15 19 H 0.07 1.48 8.14 -2.39 -0.02 1.46 15 20 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 21 H 0.06 1.40 7.91 -2.39 -0.02 1.38 15 22 H 0.22 5.30 8.06 -2.91 -0.02 5.28 15 23 H 0.09 4.55 6.07 -2.39 -0.01 4.54 15 24 H 0.03 1.30 8.14 -2.39 -0.02 1.28 15 25 H 0.03 1.77 8.14 -2.38 -0.02 1.75 15 26 H 0.27 14.01 8.31 -92.71 -0.77 13.24 15 Total: -1.00 -61.60 245.91 5.33 -56.27 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.18 Total: 2.01 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 3.72 Total: -21.98 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -1.51 Total: -81.40 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -61.60 5.33 -56.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260890272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.898 kcal (2) G-P(sol) polarization free energy of solvation -61.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds