Wall clock time and date at job start Mon Mar 30 2020 20:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47259 * 2 1 4 4 N 1.46501 * 109.46835 * 240.00247 * 2 1 3 5 5 C 1.35829 * 124.33629 * 84.72631 * 4 2 1 6 6 C 1.35252 * 107.58957 * 179.82470 * 5 4 2 7 7 Cl 1.73595 * 127.58489 * 180.12541 * 6 5 4 8 8 C 1.46750 * 104.82860 * 0.40710 * 6 5 4 9 9 C 1.41394 * 126.96788 * 179.76172 * 8 6 5 10 10 H 1.08000 * 119.99486 * 354.31207 * 9 8 6 11 11 C 1.39855 * 120.00003 * 174.32081 * 9 8 6 12 12 N 1.30892 * 120.00500 * 6.00717 * 11 9 8 13 13 Si 1.86805 * 119.99758 * 186.00643 * 11 9 8 14 14 H 1.48500 * 109.47091 * 94.98196 * 13 11 9 15 15 H 1.48501 * 109.46915 * 214.97807 * 13 11 9 16 16 H 1.48496 * 109.47285 * 334.97923 * 13 11 9 17 17 N 1.28319 * 124.33138 * 265.02315 * 4 2 1 18 18 H 1.09005 * 109.46740 * 59.99523 * 1 2 3 19 19 H 1.09002 * 109.46921 * 300.00405 * 1 2 3 20 20 H 1.08996 * 109.47122 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46743 * 120.00486 * 2 1 3 22 22 H 1.09006 * 109.46784 * 60.00116 * 3 2 1 23 23 H 1.08999 * 109.47252 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47184 * 300.00214 * 3 2 1 25 25 H 1.08001 * 126.20592 * 359.96506 * 5 4 2 26 26 H 0.96997 * 120.00439 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1765 -0.1017 -2.4099 6 6 2.6456 -1.0413 -3.2622 7 17 3.0325 -0.8475 -4.9433 8 6 2.7491 -2.2624 -2.4549 9 6 3.1890 -3.5341 -2.8891 10 1 3.4056 -3.7028 -3.9336 11 6 3.3433 -4.5734 -1.9661 12 7 2.9699 -4.4055 -0.7229 13 14 4.0824 -6.2013 -2.5076 14 1 5.5392 -6.2038 -2.2194 15 1 3.4297 -7.3115 -1.7683 16 1 3.8659 -6.3828 -3.9654 17 7 2.3462 -1.9306 -1.2328 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.8933 -0.5139 0.8899 22 1 1.6767 1.9563 0.8901 23 1 3.1301 1.4425 0.0005 24 1 1.6768 1.9563 -0.8899 25 1 1.9678 0.9304 -2.6503 26 1 3.0772 -5.1262 -0.0826 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261097240.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:48 Heat of formation + Delta-G solvation = 35.871965 kcal Electronic energy + Delta-G solvation = -12249.143062 eV Core-core repulsion = 9968.284064 eV Total energy + Delta-G solvation = -2280.858998 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.22766 -37.07181 -36.38638 -34.94271 -30.91288 -30.64484 -28.13478 -27.34712 -23.30496 -21.85089 -20.49695 -18.70066 -17.73811 -16.57407 -16.09545 -15.43049 -14.91593 -14.73686 -14.26698 -13.80996 -13.24198 -13.07111 -12.88656 -12.76664 -12.58331 -12.46234 -12.09856 -11.98470 -11.92222 -11.48760 -11.13208 -10.33546 -9.46955 -9.04421 -8.32682 -6.22069 1.39772 1.43298 1.57650 1.59981 1.62484 2.29163 2.33705 2.64057 3.54314 3.80210 4.08083 4.16236 4.22061 4.67340 4.71165 4.84340 4.89091 5.01307 5.19660 5.24357 5.30570 5.35854 5.63712 6.39216 6.74558 6.90359 7.18632 8.30494 8.67369 Molecular weight = 214.06amu Principal moments of inertia in cm(-1) A = 0.027168 B = 0.011872 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.369926 B = 2357.971218 C = 3224.593709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.142 3.858 3 C -0.149 4.149 4 N -0.324 5.324 5 C 0.000 4.000 6 C -0.240 4.240 7 Cl -0.064 7.064 8 C 0.169 3.831 9 C -0.474 4.474 10 H 0.079 0.921 11 C 0.026 3.974 12 N -0.817 5.817 13 Si 0.982 3.018 14 H -0.267 1.267 15 H -0.272 1.272 16 H -0.258 1.258 17 N -0.361 5.361 18 H 0.064 0.936 19 H 0.106 0.894 20 H 0.032 0.968 21 H 0.080 0.920 22 H 0.108 0.892 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.191 0.809 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 8.849 1.086 9.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 C -0.207 4.207 4 N -0.108 5.108 5 C -0.147 4.147 6 C -0.280 4.280 7 Cl -0.036 7.036 8 C 0.018 3.982 9 C -0.512 4.512 10 H 0.097 0.903 11 C -0.189 4.189 12 N -0.446 5.446 13 Si 0.803 3.197 14 H -0.192 1.192 15 H -0.197 1.197 16 H -0.182 1.182 17 N -0.193 5.193 18 H 0.083 0.917 19 H 0.124 0.876 20 H 0.052 0.948 21 H 0.098 0.902 22 H 0.126 0.874 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.208 0.792 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.869 8.475 2.415 9.267 hybrid contribution 0.505 -0.560 -1.176 1.397 sum -2.364 7.914 1.239 8.352 Atomic orbital electron populations 1.22131 0.92906 1.01678 1.04122 1.21469 0.95685 0.93907 0.84799 1.22113 1.01309 0.92246 1.05013 1.45787 1.49682 1.07126 1.08228 1.22263 1.06614 0.99262 0.86522 1.22263 1.22195 0.96881 0.86687 1.98161 1.93820 1.97347 1.14250 1.20741 0.96627 0.93304 0.87481 1.18822 1.43504 0.93340 0.95560 0.90265 1.26650 0.94432 1.03397 0.94435 1.70087 1.36875 1.33589 1.04097 0.85198 0.78575 0.76523 0.79356 1.19250 1.19688 1.18221 1.74631 1.27561 0.95400 1.21747 0.91691 0.87564 0.94846 0.90162 0.87367 0.93020 0.90594 0.79200 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 9.52 71.98 0.69 -3.49 15 2 C 0.14 4.69 3.77 44.99 0.17 4.86 15 3 C -0.15 -3.44 8.80 71.98 0.63 -2.80 15 4 N -0.32 -14.60 3.22 -326.82 -1.05 -15.65 15 5 C 0.00 0.00 10.51 83.39 0.88 0.87 15 6 C -0.24 -11.87 7.04 23.81 0.17 -11.70 15 7 Cl -0.06 -2.70 29.33 -2.72 -0.08 -2.78 15 8 C 0.17 9.85 6.95 41.99 0.29 10.14 15 9 C -0.47 -27.91 9.44 23.44 0.22 -27.68 15 10 H 0.08 4.52 7.85 -2.91 -0.02 4.49 15 11 C 0.03 1.42 5.49 85.22 0.47 1.89 15 12 N -0.82 -47.82 12.03 21.81 0.26 -47.56 15 13 Si 0.98 42.37 29.56 68.60 2.03 44.40 15 14 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 15 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 16 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 17 N -0.36 -20.49 10.27 -48.41 -0.50 -20.98 15 18 H 0.06 1.69 8.14 -2.38 -0.02 1.68 15 19 H 0.11 2.06 8.14 -2.39 -0.02 2.04 15 20 H 0.03 1.13 8.14 -2.39 -0.02 1.11 15 21 H 0.08 2.86 8.14 -2.39 -0.02 2.84 15 22 H 0.11 1.72 8.14 -2.38 -0.02 1.70 15 23 H 0.05 1.32 8.14 -2.39 -0.02 1.31 15 24 H 0.08 1.56 7.00 -2.39 -0.02 1.54 15 25 H 0.19 6.15 7.12 -2.91 -0.02 6.13 15 26 H 0.27 14.62 8.30 -92.71 -0.77 13.85 15 Total: -1.00 -70.15 246.36 5.35 -64.80 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.17 Total: 5.68 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 3.51 Total: -27.92 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -1.29 Total: -84.19 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 17 Polarization: -2.70 SS G_CDS: -0.08 Total: -2.78 kcal Total: -70.15 5.35 -64.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097240.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.675 kcal (2) G-P(sol) polarization free energy of solvation -70.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds