Wall clock time and date at job start Mon Mar 30 2020 20:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30552 * 1 3 3 Si 1.86799 * 119.99860 * 2 1 4 4 H 1.48495 * 109.47226 * 239.99988 * 3 2 1 5 5 H 1.48497 * 109.47418 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47009 * 120.00190 * 3 2 1 7 7 C 1.40549 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00692 * 179.97438 * 7 2 1 9 9 C 1.39064 * 119.99302 * 0.02562 * 7 2 1 10 10 S 1.75808 * 125.38704 * 359.95523 * 9 7 2 11 11 C 1.75661 * 91.50528 * 180.02562 * 10 9 7 12 12 C 1.34654 * 110.67053 * 359.72461 * 11 10 9 13 13 O 1.35911 * 122.44670 * 180.27499 * 12 11 10 14 14 C 1.38709 * 115.10151 * 0.49424 * 12 11 10 15 15 C 1.46435 * 123.25402 * 179.76662 * 14 12 11 16 16 O 1.21653 * 119.99715 * 269.69985 * 15 14 12 17 17 O 1.34916 * 120.00294 * 89.42439 * 15 14 12 18 18 H 0.97005 * 120.00072 * 359.97438 * 1 2 3 19 19 H 1.08004 * 124.66290 * 180.02562 * 11 10 9 20 20 H 0.96697 * 114.00099 * 270.22648 * 13 12 11 21 21 H 0.96708 * 114.00037 * 0.27816 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.0932 1.6965 -1.2124 5 1 1.2745 2.7465 0.0006 6 1 3.0933 1.6964 1.2126 7 6 2.0084 -1.2171 0.0005 8 1 3.0883 -1.2172 0.0001 9 6 1.3130 -2.4214 0.0005 10 16 -0.4373 -2.5864 0.0010 11 6 -0.3185 -4.3390 0.0015 12 6 0.9707 -4.7280 -0.0048 13 8 1.3374 -6.0367 -0.0113 14 6 1.8969 -3.6955 0.0008 15 6 3.3446 -3.9155 0.0004 16 8 3.9463 -4.0066 1.0538 17 8 4.0104 -4.0227 -1.1682 18 1 -0.4850 0.8401 0.0004 19 1 -1.1632 -5.0120 0.0015 20 1 1.4434 -6.4199 0.8701 21 1 3.4483 -3.9369 -1.9504 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261153110.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:51 Heat of formation + Delta-G solvation = -154.380451 kcal Electronic energy + Delta-G solvation = -12035.679821 eV Core-core repulsion = 9580.488720 eV Total energy + Delta-G solvation = -2455.191101 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 214.013 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.90064 -38.99626 -37.14894 -36.75591 -34.98297 -30.84237 -27.96129 -24.71735 -22.97238 -21.10237 -20.41976 -18.52982 -17.73770 -17.25449 -17.18653 -16.22201 -15.91056 -15.60169 -14.65541 -14.52240 -14.07749 -13.57136 -13.49196 -12.62403 -12.43185 -12.39057 -12.18534 -11.90536 -11.36428 -11.22003 -10.85884 -9.62395 -9.03996 -8.79383 -6.80421 0.60663 1.33714 1.35955 1.39338 1.47899 1.50843 1.77305 1.94530 2.11752 2.76050 3.01594 3.79466 4.27105 4.75476 4.80009 5.16148 5.54850 5.70492 5.87741 6.11269 6.32725 6.49589 6.89782 6.94409 7.80637 Molecular weight = 214.01amu Principal moments of inertia in cm(-1) A = 0.032462 B = 0.013820 C = 0.010246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.350146 B = 2025.564241 C = 2732.127865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.024 3.976 3 Si 1.006 2.994 4 H -0.252 1.252 5 H -0.250 1.250 6 H -0.262 1.262 7 C -0.387 4.387 8 H 0.092 0.908 9 C 0.044 3.956 10 S 0.167 5.833 11 C -0.435 4.435 12 C 0.168 3.832 13 O -0.509 6.509 14 C -0.476 4.476 15 C 0.601 3.399 16 O -0.539 6.539 17 O -0.511 6.511 18 H 0.320 0.680 19 H 0.146 0.854 20 H 0.394 0.606 21 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.335 2.825 -2.339 3.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.199 4.199 3 Si 0.824 3.176 4 H -0.175 1.175 5 H -0.173 1.173 6 H -0.187 1.187 7 C -0.421 4.421 8 H 0.110 0.890 9 C -0.077 4.077 10 S 0.425 5.575 11 C -0.569 4.569 12 C 0.114 3.886 13 O -0.320 6.320 14 C -0.483 4.483 15 C 0.444 3.556 16 O -0.429 6.429 17 O -0.321 6.321 18 H 0.135 0.865 19 H 0.164 0.836 20 H 0.250 0.750 21 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -2.049 3.762 -2.131 4.785 hybrid contribution 0.979 -0.832 0.170 1.296 sum -1.070 2.930 -1.961 3.684 Atomic orbital electron populations 1.68635 1.08981 1.33676 1.28356 1.27231 0.95916 1.05546 0.91211 0.84816 0.78726 0.73463 0.80582 1.17534 1.17281 1.18656 1.19521 0.95940 0.89886 1.36795 0.89004 1.21801 0.96971 0.94144 0.94801 1.84322 1.02159 0.94325 1.76723 1.25787 0.98547 1.03449 1.29156 1.16734 0.90204 0.82114 0.99552 1.84632 1.91021 1.22043 1.34283 1.18608 0.92139 0.93948 1.43620 1.19718 0.85805 0.68201 0.81874 1.90689 1.72983 1.48979 1.30239 1.84715 1.44333 1.84533 1.18532 0.86531 0.83619 0.75040 0.71370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -32.72 10.63 21.93 0.23 -32.49 14 2 C 0.02 1.03 5.50 85.45 0.47 1.50 14 3 Si 1.01 31.81 29.56 68.60 2.03 33.84 14 4 H -0.25 -7.75 7.11 99.48 0.71 -7.04 14 5 H -0.25 -7.05 7.11 99.48 0.71 -6.34 14 6 H -0.26 -8.53 7.11 99.48 0.71 -7.83 14 7 C -0.39 -18.61 8.96 23.03 0.21 -18.40 14 8 H 0.09 4.43 7.45 -2.91 -0.02 4.40 14 9 C 0.04 2.21 6.21 22.93 0.14 2.36 14 10 S 0.17 7.72 20.21 -56.49 -1.14 6.58 14 11 C -0.44 -19.87 11.16 67.00 0.75 -19.12 14 12 C 0.17 7.94 6.68 21.56 0.14 8.09 14 13 O -0.51 -21.35 13.30 -92.55 -1.23 -22.58 14 14 C -0.48 -23.68 5.48 -20.57 -0.11 -23.79 14 15 C 0.60 29.64 7.02 69.96 0.49 30.13 14 16 O -0.54 -29.75 17.96 19.34 0.35 -29.40 14 17 O -0.51 -21.09 13.61 -58.31 -0.79 -21.88 14 18 H 0.32 11.74 8.29 -92.70 -0.77 10.97 14 19 H 0.15 6.04 8.06 -2.91 -0.02 6.02 14 20 H 0.39 13.29 9.06 -74.06 -0.67 12.62 14 21 H 0.43 13.65 8.79 -74.05 -0.65 12.99 14 Total: -1.00 -60.89 219.27 1.52 -59.38 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.02 Total: 25.80 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 2.09 Total: -19.24 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.23 Total: -32.49 kcal Atomic # 8 Polarization: -72.19 SS G_CDS: -1.68 Total: -73.86 kcal Atomic # 14 Polarization: 31.81 SS G_CDS: 2.03 Total: 33.84 kcal Atomic # 16 Polarization: 7.72 SS G_CDS: -1.14 Total: 6.58 kcal Total: -60.89 1.52 -59.38 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153110.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.004 kcal (2) G-P(sol) polarization free energy of solvation -60.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds