Wall clock time and date at job start Mon Mar 30 2020 20:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40091 * 126.03385 * 2 1 4 4 C 1.30851 * 108.22433 * 180.30188 * 3 2 1 5 5 C 1.39933 * 108.21201 * 359.74762 * 4 3 2 6 6 Cl 1.73596 * 126.04574 * 179.97438 * 5 4 3 7 7 C 1.35045 * 126.04399 * 179.86394 * 2 1 3 8 8 C 1.50701 * 126.13067 * 359.96517 * 7 2 1 9 9 C 1.52997 * 109.47212 * 89.71545 * 8 7 2 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46756 * 59.99920 * 14 12 10 16 16 H 1.48490 * 109.47381 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47117 * 300.00527 * 14 12 10 18 18 H 1.09005 * 109.47410 * 270.13187 * 1 2 3 19 19 H 1.08996 * 109.47704 * 30.13755 * 1 2 3 20 20 H 1.09005 * 109.47172 * 150.13691 * 1 2 3 21 21 H 1.07998 * 125.89751 * 179.76656 * 4 3 2 22 22 H 1.09002 * 109.47060 * 209.71600 * 8 7 2 23 23 H 1.09001 * 109.47380 * 329.71688 * 8 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 26 26 H 0.97002 * 119.99731 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5348 0.7327 -0.0065 5 6 3.5447 -0.6666 -0.0051 6 17 4.9554 -1.6782 -0.0125 7 6 2.2596 -1.0919 0.0026 8 6 1.7982 -2.5266 0.0067 9 6 1.6346 -3.0139 -1.4343 10 6 1.1739 -4.4487 -1.4302 11 1 1.0134 -4.9616 -0.4935 12 6 0.9562 -5.1063 -2.6223 13 7 1.1512 -4.4815 -3.7631 14 14 0.3858 -6.8851 -2.6173 15 1 -0.9157 -6.9855 -1.9093 16 1 0.2257 -7.3576 -4.0159 17 1 1.3933 -7.7260 -1.9224 18 1 -0.3634 0.0024 1.0277 19 1 -0.3634 0.8887 -0.5159 20 1 -0.3634 -0.8912 -0.5117 21 1 4.4053 1.3719 -0.0118 22 1 2.5370 -3.1443 0.5175 23 1 0.8424 -2.5995 0.5256 24 1 0.8959 -2.3962 -1.9451 25 1 2.5903 -2.9410 -1.9533 26 1 0.9977 -4.9440 -4.6018 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261219910.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:57 Heat of formation + Delta-G solvation = 34.188425 kcal Electronic energy + Delta-G solvation = -12001.572488 eV Core-core repulsion = 9720.640487 eV Total energy + Delta-G solvation = -2280.932002 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.30070 -37.29143 -36.10076 -34.33689 -33.40785 -30.33279 -27.62454 -26.95121 -23.44562 -22.26997 -20.76351 -18.61030 -17.64776 -16.70323 -16.33188 -15.93488 -15.25629 -14.74924 -14.44153 -13.97224 -13.92166 -13.43391 -13.21363 -12.80696 -12.61062 -12.53408 -12.29618 -11.88569 -11.75063 -11.42886 -11.26704 -10.54410 -10.26934 -9.29573 -8.18605 -6.30511 0.72329 1.09811 1.43807 1.46253 1.53887 1.59810 1.91148 2.43083 3.15613 3.63567 3.70929 4.05017 4.38535 4.39017 4.56243 4.63344 4.69864 4.86958 4.97300 5.41218 5.47527 5.61853 5.81430 5.90046 6.19744 6.54753 6.85378 7.39341 8.92864 Molecular weight = 214.06amu Principal moments of inertia in cm(-1) A = 0.035169 B = 0.008652 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.974895 B = 3235.310347 C = 3737.949015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.370 5.370 3 N -0.312 5.312 4 C 0.066 3.934 5 C -0.213 4.213 6 Cl -0.045 7.045 7 C 0.112 3.888 8 C -0.045 4.045 9 C 0.045 3.955 10 C -0.540 4.540 11 H 0.068 0.932 12 C 0.003 3.997 13 N -0.933 5.933 14 Si 0.964 3.036 15 H -0.263 1.263 16 H -0.287 1.287 17 H -0.268 1.268 18 H 0.100 0.900 19 H 0.103 0.897 20 H 0.089 0.911 21 H 0.220 0.780 22 H 0.084 0.916 23 H 0.084 0.916 24 H -0.008 1.008 25 H -0.008 1.008 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 7.037 8.478 11.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.153 5.153 3 N -0.133 5.133 4 C -0.120 4.120 5 C -0.251 4.251 6 Cl -0.017 7.017 7 C -0.018 4.018 8 C -0.084 4.084 9 C 0.007 3.993 10 C -0.578 4.578 11 H 0.086 0.914 12 C -0.195 4.195 13 N -0.573 5.573 14 Si 0.788 3.212 15 H -0.188 1.188 16 H -0.213 1.213 17 H -0.192 1.192 18 H 0.118 0.882 19 H 0.122 0.878 20 H 0.108 0.892 21 H 0.236 0.764 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.279 7.971 8.307 11.516 hybrid contribution 0.507 -1.568 -0.500 1.722 sum 0.786 6.403 7.807 10.128 Atomic orbital electron populations 1.22204 0.71833 1.05540 1.05103 1.48525 1.07763 1.02611 1.56355 1.77306 1.01355 1.08569 1.26119 1.24219 0.96301 0.92647 0.98805 1.20651 0.88156 0.92251 1.24082 1.98291 1.37463 1.68088 1.97897 1.21270 0.90553 0.91940 0.98019 1.20366 1.01928 0.86182 0.99895 1.18798 0.95099 0.95022 0.90384 1.21584 1.45292 0.97978 0.92982 0.91366 1.25938 0.95511 1.02860 0.95162 1.70107 1.50121 1.39022 0.98048 0.85517 0.79317 0.79283 0.77054 1.18796 1.21292 1.19249 0.88171 0.87823 0.89238 0.76389 0.89729 0.89774 0.98997 0.98985 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.35 11.10 127.77 1.42 3.76 15 2 N -0.37 -12.43 4.02 -355.92 -1.43 -13.86 15 3 N -0.31 -10.38 12.57 -56.98 -0.72 -11.09 15 4 C 0.07 2.04 12.02 85.25 1.02 3.06 15 5 C -0.21 -7.50 6.64 22.02 0.15 -7.36 15 6 Cl -0.05 -1.53 28.88 -2.72 -0.08 -1.61 15 7 C 0.11 4.16 6.19 41.40 0.26 4.41 15 8 C -0.04 -1.77 4.99 29.85 0.15 -1.62 15 9 C 0.04 2.27 4.95 29.85 0.15 2.42 15 10 C -0.54 -29.30 9.11 25.60 0.23 -29.07 15 11 H 0.07 3.47 7.74 -2.91 -0.02 3.45 15 12 C 0.00 0.19 5.46 84.65 0.46 0.65 15 13 N -0.93 -55.88 13.29 21.45 0.28 -55.60 15 14 Si 0.96 42.88 29.54 68.60 2.03 44.91 15 15 H -0.26 -11.08 7.11 99.48 0.71 -10.37 15 16 H -0.29 -12.69 7.11 99.48 0.71 -11.99 15 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 18 H 0.10 1.97 8.14 -2.38 -0.02 1.95 15 19 H 0.10 2.26 8.14 -2.39 -0.02 2.24 15 20 H 0.09 2.42 7.67 -2.38 -0.02 2.40 15 21 H 0.22 4.88 8.06 -2.91 -0.02 4.85 15 22 H 0.08 3.31 7.91 -2.39 -0.02 3.29 15 23 H 0.08 2.99 7.74 -2.39 -0.02 2.97 15 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 15 25 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 15 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 15 Total: -1.00 -64.91 250.07 5.10 -59.81 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: 1.17 Total: 1.17 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 3.84 Total: -23.74 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.86 Total: -80.55 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -64.91 5.10 -59.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219910.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.002 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds