Wall clock time and date at job start Mon Mar 30 2020 20:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35042 * 126.13628 * 2 1 4 4 H 0.97004 * 126.03706 * 359.97438 * 3 2 1 5 5 N 1.40081 * 107.93110 * 179.97438 * 3 2 1 6 6 C 1.30855 * 108.22019 * 0.02562 * 5 3 2 7 7 C 1.50696 * 125.89339 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47409 * 90.02216 * 7 6 5 9 9 C 1.50696 * 109.47409 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00274 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00323 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99726 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00470 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47184 * 59.99665 * 13 11 9 15 15 H 1.48496 * 109.47752 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46890 * 300.00311 * 13 11 9 17 17 C 1.35370 * 126.13700 * 179.68632 * 2 1 3 18 18 Cl 1.73598 * 126.04448 * 0.03955 * 17 2 1 19 19 H 1.09002 * 109.47152 * 90.02455 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.02555 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.02536 * 1 2 3 22 22 H 1.09002 * 109.47376 * 210.02222 * 7 6 5 23 23 H 1.09000 * 109.47025 * 330.02025 * 7 6 5 24 24 H 1.09007 * 109.47304 * 300.00304 * 8 7 6 25 25 H 1.09000 * 109.47183 * 59.99906 * 8 7 6 26 26 H 0.97007 * 119.99670 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3034 1.0906 0.0000 4 1 2.0064 2.0141 -0.0004 5 7 3.6341 0.6530 0.0006 6 6 3.6344 -0.6556 0.0004 7 6 4.8554 -1.5387 0.0014 8 6 5.2670 -1.8384 1.4442 9 6 6.4877 -2.7221 1.4452 10 1 6.9264 -3.0381 0.5103 11 6 7.0452 -3.1263 2.6397 12 7 6.5113 -2.7411 3.7782 13 14 8.5587 -4.2212 2.6410 14 1 9.6711 -3.5288 1.9421 15 1 8.9589 -4.5111 4.0413 16 1 8.2498 -5.4936 1.9404 17 6 2.3053 -1.0932 0.0060 18 17 1.7741 -2.7459 0.0141 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 0.8902 0.5134 21 1 -0.3633 -0.8898 0.5142 22 1 4.6289 -2.4726 -0.5131 23 1 5.6720 -1.0303 -0.5113 24 1 5.4936 -0.9045 1.9588 25 1 4.4505 -2.3468 1.9568 26 1 6.9038 -3.0253 4.6186 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222196.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:59 Heat of formation + Delta-G solvation = 21.366603 kcal Electronic energy + Delta-G solvation = -11833.349182 eV Core-core repulsion = 9551.861184 eV Total energy + Delta-G solvation = -2281.487998 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.33365 -37.30031 -36.15759 -34.31502 -32.66080 -31.12204 -27.91347 -27.33833 -23.66369 -21.69156 -20.68390 -18.61604 -18.40596 -16.56407 -16.13873 -15.62789 -15.25005 -14.83198 -14.24997 -14.06762 -13.68771 -13.27131 -12.99173 -12.79930 -12.77907 -12.51130 -12.25760 -11.84286 -11.74337 -11.42858 -11.18720 -10.52242 -10.24457 -9.39112 -8.16442 -6.28206 0.71318 1.23437 1.42723 1.47095 1.50618 1.55384 2.07320 2.44941 3.16929 3.59798 3.79959 4.07292 4.35641 4.65050 4.72093 4.77888 4.93346 4.99414 5.09607 5.35141 5.50663 5.67266 5.84459 6.23626 6.33438 6.58074 6.87131 7.40669 8.95734 Molecular weight = 214.06amu Principal moments of inertia in cm(-1) A = 0.047221 B = 0.007450 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.814813 B = 3757.401961 C = 4024.578817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.118 3.882 3 N -0.459 5.459 4 H 0.458 0.542 5 N -0.320 5.320 6 C 0.095 3.905 7 C -0.030 4.030 8 C 0.046 3.954 9 C -0.542 4.542 10 H 0.067 0.933 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.264 1.264 17 C -0.214 4.214 18 Cl -0.041 7.041 19 H 0.107 0.893 20 H 0.103 0.897 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.068 0.932 24 H -0.018 1.018 25 H -0.005 1.005 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.339 5.055 -8.506 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.014 4.014 3 N -0.170 5.170 4 H 0.307 0.693 5 N -0.143 5.143 6 C -0.071 4.071 7 C -0.069 4.069 8 C 0.008 3.992 9 C -0.579 4.579 10 H 0.085 0.915 11 C -0.197 4.197 12 N -0.575 5.575 13 Si 0.792 3.208 14 H -0.191 1.191 15 H -0.209 1.209 16 H -0.189 1.189 17 C -0.252 4.252 18 Cl -0.013 7.013 19 H 0.126 0.874 20 H 0.122 0.878 21 H 0.108 0.892 22 H 0.100 0.900 23 H 0.087 0.913 24 H 0.001 0.999 25 H 0.013 0.987 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.651 5.971 -8.333 16.283 hybrid contribution 0.246 -0.837 0.453 0.983 sum -12.405 5.134 -7.881 15.568 Atomic orbital electron populations 1.20714 0.82784 1.05769 1.05562 1.21337 0.96447 0.85685 0.97907 1.46013 1.03032 1.08873 1.59063 0.69316 1.77385 0.97958 1.11705 1.27243 1.22604 0.95782 0.91680 0.97046 1.20065 0.91219 0.96175 0.99436 1.18770 0.95159 0.94558 0.90681 1.21615 1.12554 1.30729 0.93051 0.91530 1.25993 1.00808 0.97843 0.95066 1.70122 1.42498 1.46826 0.98019 0.85462 0.78984 0.79208 0.77158 1.19122 1.20942 1.18866 1.20621 0.92634 0.87573 1.24344 1.98287 1.89613 1.15526 1.97847 0.87424 0.87801 0.89206 0.90006 0.91345 0.99927 0.98672 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 10.26 71.24 0.73 -0.60 15 2 C 0.12 3.10 7.21 41.40 0.30 3.40 15 3 N -0.46 -12.41 7.36 -47.92 -0.35 -12.77 15 4 H 0.46 8.12 8.96 -213.33 -1.91 6.20 15 5 N -0.32 -12.30 12.70 -47.34 -0.60 -12.90 15 6 C 0.10 3.92 6.47 43.11 0.28 4.19 15 7 C -0.03 -1.35 5.58 29.85 0.17 -1.19 15 8 C 0.05 2.61 4.95 29.85 0.15 2.76 15 9 C -0.54 -31.77 9.11 25.60 0.23 -31.54 15 10 H 0.07 3.68 7.74 -2.91 -0.02 3.66 15 11 C 0.00 0.03 5.46 84.65 0.46 0.50 15 12 N -0.93 -58.66 13.29 21.45 0.28 -58.38 15 13 Si 0.97 45.15 29.54 68.60 2.03 47.17 15 14 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 16 H -0.26 -11.72 7.11 99.48 0.71 -11.02 15 17 C -0.21 -7.45 6.63 22.02 0.15 -7.30 15 18 Cl -0.04 -1.34 28.59 -2.72 -0.08 -1.42 15 19 H 0.11 1.15 8.14 -2.39 -0.02 1.13 15 20 H 0.10 0.95 8.14 -2.39 -0.02 0.93 15 21 H 0.09 1.40 7.90 -2.38 -0.02 1.38 15 22 H 0.08 3.54 8.02 -2.39 -0.02 3.52 15 23 H 0.07 3.05 8.14 -2.39 -0.02 3.03 15 24 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 15 25 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 15 26 H 0.26 15.50 8.31 -92.70 -0.77 14.73 15 Total: -1.00 -72.43 250.11 3.02 -69.41 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -0.72 Total: -1.34 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 2.46 Total: -29.78 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -0.67 Total: -84.04 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -72.43 3.02 -69.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222196.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.774 kcal (2) G-P(sol) polarization free energy of solvation -72.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds