Wall clock time and date at job start Mon Mar 30 2020 20:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35444 * 117.00098 * 2 1 4 4 N 1.31444 * 127.49708 * 179.97438 * 3 2 1 5 5 C 1.31284 * 116.84573 * 180.02562 * 4 3 2 6 6 C 1.50700 * 121.07804 * 179.97438 * 5 4 3 7 7 H 1.09008 * 109.46546 * 359.97438 * 6 5 4 8 8 C 1.53003 * 109.47239 * 240.00279 * 6 5 4 9 9 C 1.50690 * 109.47426 * 119.99555 * 6 5 4 10 10 H 1.08003 * 120.00350 * 0.02562 * 9 6 5 11 11 C 1.37884 * 120.00318 * 180.02562 * 9 6 5 12 12 N 1.31521 * 119.99439 * 0.02562 * 11 9 6 13 13 Si 1.86793 * 120.00368 * 180.02562 * 11 9 6 14 14 H 1.48495 * 109.47166 * 89.99858 * 13 11 9 15 15 H 1.48502 * 109.47088 * 210.00316 * 13 11 9 16 16 H 1.48503 * 109.46916 * 330.00142 * 13 11 9 17 17 N 1.30144 * 117.85542 * 0.02562 * 5 4 3 18 18 S 1.69953 * 105.72879 * 0.02562 * 17 5 4 19 19 H 1.08998 * 109.46660 * 300.00113 * 1 2 3 20 20 H 1.08997 * 109.46781 * 59.99510 * 1 2 3 21 21 H 1.08994 * 109.46944 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47142 * 179.97438 * 8 6 5 23 23 H 1.08996 * 109.46788 * 299.99653 * 8 6 5 24 24 H 1.08994 * 109.47028 * 59.99402 * 8 6 5 25 25 H 0.97004 * 119.99731 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2068 0.0000 4 7 3.3364 1.4462 0.0005 5 6 3.7060 2.7060 0.0009 6 6 5.1635 3.0891 0.0020 7 1 5.7761 2.1875 0.0028 8 6 5.4724 3.9162 1.2516 9 6 5.4697 3.9039 -1.2281 10 1 4.6871 4.1229 -1.9395 11 6 6.7490 4.3700 -1.4456 12 7 7.7021 4.1029 -0.5795 13 14 7.1284 5.3805 -2.9700 14 1 6.9209 6.8207 -2.6734 15 1 8.5399 5.1565 -3.3737 16 1 6.2261 4.9677 -4.0748 17 7 2.7730 3.6134 0.0013 18 16 1.3022 2.7619 0.0019 19 1 -0.3632 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 6.5267 4.1929 1.2527 23 1 4.8598 4.8177 1.2512 24 1 5.2509 3.3268 2.1413 25 1 8.6023 4.4304 -0.7327 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261248514.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:03 Heat of formation + Delta-G solvation = 22.236223 kcal Electronic energy + Delta-G solvation = -12040.819618 eV Core-core repulsion = 9761.413036 eV Total energy + Delta-G solvation = -2279.406582 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.90257 -38.62377 -34.12323 -31.53847 -29.99380 -27.83471 -25.25169 -24.72636 -21.84508 -19.19096 -18.80864 -17.31620 -16.44044 -16.04224 -15.07928 -14.78852 -14.01064 -13.47941 -12.77147 -12.55595 -11.86752 -11.74315 -11.43924 -10.96238 -10.89054 -10.75712 -10.38444 -10.19131 -9.84882 -9.41501 -9.20614 -9.10177 -8.42826 -8.33659 -6.05999 -4.11990 1.03436 1.25283 2.08787 2.69810 3.30260 3.32669 3.37950 3.43818 4.41538 4.78406 4.85204 5.01383 5.21458 5.28465 6.10866 6.42934 6.66596 6.80105 7.00761 7.09044 7.56640 7.76878 7.99000 8.18467 8.37970 8.87035 9.51282 11.00727 Molecular weight = 214.05amu Principal moments of inertia in cm(-1) A = 0.052797 B = 0.008119 C = 0.007894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.207986 B = 3448.000025 C = 3546.360839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.263 6.263 3 C 0.269 3.731 4 N -0.521 5.521 5 C 0.336 3.664 6 C 0.121 3.879 7 H 0.062 0.938 8 C -0.131 4.131 9 C -0.505 4.505 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.888 5.888 13 Si 0.902 3.098 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.444 5.444 18 S 0.096 5.904 19 H 0.067 0.933 20 H 0.067 0.933 21 H 0.118 0.882 22 H 0.095 0.905 23 H 0.038 0.962 24 H 0.010 0.990 25 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.725 -5.393 1.742 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.167 6.167 3 C -0.057 4.057 4 N -0.257 5.257 5 C 0.049 3.951 6 C 0.098 3.902 7 H 0.080 0.920 8 C -0.189 4.189 9 C -0.545 4.545 10 H 0.077 0.923 11 C -0.137 4.137 12 N -0.527 5.527 13 Si 0.729 3.271 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.275 5.275 18 S 0.228 5.772 19 H 0.085 0.915 20 H 0.086 0.914 21 H 0.136 0.864 22 H 0.114 0.886 23 H 0.057 0.943 24 H 0.029 0.971 25 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.066 -4.549 1.774 13.948 hybrid contribution 0.550 -0.134 -0.836 1.010 sum -12.516 -4.684 0.938 13.397 Atomic orbital electron populations 1.23492 0.75670 1.05463 1.02815 1.85856 1.22227 1.21118 1.87498 1.26933 0.92415 0.90953 0.95422 1.67271 1.11282 1.21706 1.25405 1.24571 1.01053 0.80523 0.88911 1.17824 0.78324 0.97579 0.96498 0.92028 1.21795 1.04835 0.98244 0.94068 1.20910 0.95140 1.33120 1.05288 0.92269 1.24891 0.95871 0.96060 0.96884 1.69876 1.01854 1.45617 1.35314 0.86432 0.77456 0.80370 0.82828 1.20503 1.21065 1.19905 1.77996 0.94851 1.23288 1.31333 1.84890 1.22488 0.97777 1.72010 0.91468 0.91441 0.86414 0.88610 0.94292 0.97053 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.36 101.05 1.05 1.24 15 2 O -0.26 -3.91 10.55 -18.02 -0.19 -4.10 15 3 C 0.27 4.98 8.62 52.60 0.45 5.43 15 4 N -0.52 -11.84 10.59 -15.36 -0.16 -12.00 15 5 C 0.34 8.14 6.15 -159.03 -0.98 7.16 15 6 C 0.12 3.21 2.69 -92.93 -0.25 2.96 15 7 H 0.06 1.72 8.13 -51.92 -0.42 1.30 15 8 C -0.13 -3.26 8.89 37.16 0.33 -2.93 15 9 C -0.51 -14.24 8.46 -34.44 -0.29 -14.54 15 10 H 0.06 1.70 7.74 -52.48 -0.41 1.29 15 11 C 0.06 1.80 5.30 -17.81 -0.09 1.70 15 12 N -0.89 -25.06 11.32 55.43 0.63 -24.44 15 13 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 15 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 17 N -0.44 -10.23 11.88 29.51 0.35 -9.88 15 18 S 0.10 1.68 22.83 -107.50 -2.45 -0.78 15 19 H 0.07 0.51 8.11 -51.93 -0.42 0.09 15 20 H 0.07 0.53 8.11 -51.93 -0.42 0.10 15 21 H 0.12 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.10 2.53 6.07 -51.93 -0.32 2.22 15 23 H 0.04 0.96 8.08 -51.93 -0.42 0.54 15 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 LS Contribution 239.35 15.07 3.61 3.61 Total: -1.00 -30.96 239.35 -5.41 -36.37 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: -2.39 Total: -6.33 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 0.22 Total: 1.03 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.82 Total: -46.31 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.19 Total: -4.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.45 Total: -0.78 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.96 -5.41 -36.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248514.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.607 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds