Wall clock time and date at job start Mon Mar 30 2020 20:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86801 * 120.00259 * 2 1 4 4 H 1.48490 * 109.47105 * 269.72564 * 3 2 1 5 5 H 1.48505 * 109.46883 * 29.72258 * 3 2 1 6 6 H 1.48495 * 109.46969 * 149.72186 * 3 2 1 7 7 C 1.38636 * 119.99627 * 179.72219 * 2 1 3 8 8 H 1.08006 * 119.99805 * 180.27672 * 7 2 1 9 9 O 1.34806 * 120.00139 * 0.27411 * 7 2 1 10 10 C 1.35818 * 116.99829 * 174.93208 * 9 7 2 11 11 C 1.38756 * 120.07935 * 5.60624 * 10 9 7 12 12 C 1.38141 * 119.99670 * 179.67455 * 11 10 9 13 13 C 1.38440 * 120.15559 * 0.61539 * 12 11 10 14 14 Cl 1.73605 * 119.91769 * 179.69853 * 13 12 11 15 15 C 1.38337 * 120.15615 * 359.68081 * 13 12 11 16 16 C 1.38553 * 120.00554 * 359.97438 * 15 13 12 17 17 O 1.35941 * 120.08188 * 180.02562 * 16 15 13 18 18 H 0.97001 * 120.00481 * 180.02562 * 1 2 3 19 19 H 1.08008 * 119.99789 * 359.97131 * 11 10 9 20 20 H 1.08005 * 119.92343 * 180.29696 * 12 11 10 21 21 H 1.08000 * 119.99568 * 180.02562 * 15 13 12 22 22 H 0.96706 * 113.99753 * 270.02144 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.5031 2.0430 -1.4000 5 1 1.4443 2.6544 0.6942 6 1 3.5444 1.4418 0.7059 7 6 2.0088 -1.2007 0.0058 8 1 3.0889 -1.2007 0.0103 9 8 1.3348 -2.3681 0.0059 10 6 2.0708 -3.5050 -0.0952 11 6 3.4568 -3.4403 -0.0754 12 6 4.2036 -4.5984 -0.1715 13 6 3.5729 -5.8241 -0.3005 14 17 4.5178 -7.2748 -0.4287 15 6 2.1917 -5.8954 -0.3271 16 6 1.4360 -4.7387 -0.2240 17 8 0.0785 -4.8071 -0.2494 18 1 -0.4851 -0.8400 0.0004 19 1 3.9514 -2.4850 0.0200 20 1 5.2823 -4.5471 -0.1512 21 1 1.7023 -6.8530 -0.4274 22 1 -0.3021 -4.7409 -1.1360 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299889499.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:19 Heat of formation + Delta-G solvation = -82.877535 kcal Electronic energy + Delta-G solvation = -11786.452418 eV Core-core repulsion = 9332.318209 eV Total energy + Delta-G solvation = -2454.134208 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 214.018 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.27024 -38.91972 -37.94751 -36.77579 -34.34991 -31.31113 -30.09088 -27.06176 -23.80737 -23.34500 -20.42880 -19.77418 -18.23905 -17.41174 -16.86604 -15.99770 -15.71344 -15.54763 -15.40059 -14.92217 -13.94474 -13.52626 -13.34204 -12.66070 -12.51719 -12.11938 -11.92650 -11.90250 -11.79997 -11.31494 -10.76933 -9.91872 -9.09257 -8.97883 -6.28844 0.17384 0.27155 1.18918 1.50509 1.62371 1.78479 2.32296 2.50610 3.01313 3.13891 3.31116 3.88791 4.07806 4.30470 4.60166 4.84200 4.96963 5.11053 5.30517 5.42054 5.64841 6.14263 6.72860 6.81624 7.52066 8.45610 Molecular weight = 214.02amu Principal moments of inertia in cm(-1) A = 0.050980 B = 0.008083 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.100187 B = 3463.088538 C = 3996.546444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.040 4.040 3 Si 1.147 2.853 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.492 4.492 8 H 0.098 0.902 9 O -0.230 6.230 10 C 0.098 3.902 11 C -0.215 4.215 12 C -0.060 4.060 13 C -0.096 4.096 14 Cl -0.064 7.064 15 C -0.083 4.083 16 C 0.028 3.972 17 O -0.498 6.498 18 H 0.263 0.737 19 H 0.139 0.861 20 H 0.157 0.843 21 H 0.158 0.842 22 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.365 -8.548 -2.350 12.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.238 4.238 3 Si 0.963 3.037 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.567 4.567 8 H 0.116 0.884 9 O -0.136 6.136 10 C 0.046 3.954 11 C -0.234 4.234 12 C -0.078 4.078 13 C -0.123 4.123 14 Cl -0.035 7.035 15 C -0.102 4.102 16 C -0.018 4.018 17 O -0.308 6.308 18 H 0.071 0.929 19 H 0.156 0.844 20 H 0.175 0.825 21 H 0.176 0.824 22 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.042 -7.045 -1.731 10.831 hybrid contribution -0.191 -1.801 -0.466 1.870 sum 7.851 -8.846 -2.197 12.030 Atomic orbital electron populations 1.70681 1.07849 1.30384 1.45534 1.28425 0.96842 1.04940 0.93569 0.82543 0.73905 0.68629 0.78642 1.18777 1.20053 1.18061 1.22731 0.94011 0.82700 1.57305 0.88422 1.83722 1.36324 1.12827 1.80753 1.20327 0.91935 0.87336 0.95788 1.21168 0.92217 1.00144 1.09914 1.21000 1.01026 0.89290 0.96502 1.20370 0.91111 0.87980 1.12845 1.98315 1.72089 1.36130 1.96966 1.21015 0.91972 0.97840 0.99374 1.17695 0.83614 0.89543 1.10933 1.84821 1.15860 1.95266 1.34892 0.92876 0.84390 0.82532 0.82423 0.74875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.55 13.70 21.61 0.30 -55.25 14 2 C -0.04 -2.24 5.49 84.83 0.47 -1.77 14 3 Si 1.15 46.18 29.92 68.60 2.05 48.23 14 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 14 5 H -0.28 -11.02 7.11 99.48 0.71 -10.32 14 6 H -0.26 -9.16 7.11 99.48 0.71 -8.45 14 7 C -0.49 -27.54 9.49 67.91 0.64 -26.89 14 8 H 0.10 4.99 5.21 -2.91 -0.02 4.98 14 9 O -0.23 -13.13 8.94 -9.43 -0.08 -13.22 14 10 C 0.10 4.65 6.66 22.66 0.15 4.80 14 11 C -0.21 -8.78 9.16 22.37 0.20 -8.57 14 12 C -0.06 -1.95 9.82 22.29 0.22 -1.73 14 13 C -0.10 -3.01 6.32 22.34 0.14 -2.87 14 14 Cl -0.06 -1.62 28.95 -2.72 -0.08 -1.70 14 15 C -0.08 -2.77 9.76 22.37 0.22 -2.55 14 16 C 0.03 1.16 6.72 22.61 0.15 1.31 14 17 O -0.50 -19.84 13.29 -79.07 -1.05 -20.90 14 18 H 0.26 16.77 7.97 -92.71 -0.74 16.03 14 19 H 0.14 5.64 5.64 -2.91 -0.02 5.63 14 20 H 0.16 4.06 8.06 -2.91 -0.02 4.04 14 21 H 0.16 4.36 8.06 -2.91 -0.02 4.33 14 22 H 0.39 12.13 9.06 -74.05 -0.67 11.46 14 Total: -1.00 -66.44 223.54 3.96 -62.47 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.63 Total: 18.64 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 2.20 Total: -38.28 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.30 Total: -55.25 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -1.14 Total: -34.11 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.05 Total: 48.23 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -66.44 3.96 -62.47 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299889499.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.405 kcal (2) G-P(sol) polarization free energy of solvation -66.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds