Wall clock time and date at job start Mon Mar 30 2020 20:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76195 * 100.00056 * 2 1 4 4 N 1.29608 * 122.88169 * 359.91413 * 3 2 1 5 5 C 1.46921 * 109.97376 * 179.97438 * 4 3 2 6 6 C 1.54145 * 104.22242 * 0.12263 * 5 4 3 7 7 N 1.37305 * 122.92229 * 180.02562 * 3 2 1 8 8 C 1.34768 * 125.85451 * 359.97438 * 7 3 2 9 9 O 1.21690 * 119.99682 * 354.93361 * 8 7 3 10 10 C 1.46232 * 120.00566 * 174.92915 * 8 7 3 11 11 H 1.08001 * 119.99777 * 5.07894 * 10 8 7 12 12 C 1.40115 * 120.00447 * 185.07453 * 10 8 7 13 13 N 1.30644 * 119.99976 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 120.00362 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47224 * 59.99367 * 14 12 10 16 16 H 1.48494 * 109.47166 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46607 * 299.99956 * 14 12 10 18 18 H 1.09000 * 109.47171 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.47076 * 299.99532 * 1 2 3 20 20 H 1.08999 * 109.47245 * 60.00075 * 1 2 3 21 21 H 1.08992 * 110.50375 * 241.39449 * 5 4 3 22 22 H 1.09010 * 110.50186 * 118.84235 * 5 4 3 23 23 H 1.08998 * 110.65631 * 118.38012 * 6 5 4 24 24 H 1.08996 * 110.65415 * 241.47681 * 6 5 4 25 25 H 0.96995 * 120.00320 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.1663 2.6172 -0.0016 5 6 1.7382 3.9705 -0.0005 6 6 3.2620 3.7377 -0.0010 7 7 3.3806 2.2699 -0.0005 8 6 4.5331 1.5713 -0.0006 9 8 4.5092 0.3583 0.0929 10 6 5.8123 2.2709 -0.1131 11 1 5.8391 3.3506 -0.1135 12 6 7.0032 1.5405 -0.2203 13 7 6.9709 0.2345 -0.2192 14 14 8.6374 2.4342 -0.3633 15 1 8.8440 3.2832 0.8374 16 1 9.7373 1.4416 -0.4636 17 1 8.6297 3.2883 -1.5781 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.4350 4.5123 0.8952 22 1 1.4347 4.5140 -0.8954 23 1 3.7151 4.1597 -0.8981 24 1 3.7157 4.1603 0.8954 25 1 7.7953 -0.2711 -0.2930 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306364487.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:32 Heat of formation + Delta-G solvation = -7.433537 kcal Electronic energy + Delta-G solvation = -12285.318496 eV Core-core repulsion = 10004.625337 eV Total energy + Delta-G solvation = -2280.693159 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.62567 -36.37493 -32.82760 -31.54622 -29.49452 -28.24801 -26.58214 -22.81901 -21.35681 -19.96847 -17.28310 -15.97537 -15.59661 -15.21379 -14.41404 -14.01739 -13.31550 -13.14639 -12.84868 -12.73920 -12.14297 -11.85806 -11.55304 -11.47773 -11.24388 -10.74054 -10.66150 -10.47925 -9.83512 -9.51222 -9.06462 -7.91167 -7.70312 -7.09184 -6.47224 -4.95759 1.95250 2.63633 2.89027 3.04536 3.08496 3.10528 3.89350 4.30317 4.34091 5.09442 5.35645 5.55562 5.64121 5.68176 5.80372 5.88014 6.18999 6.29860 6.35639 6.61611 7.17612 7.73526 8.03769 8.05750 8.71813 8.93187 10.14414 10.41784 Molecular weight = 214.05amu Principal moments of inertia in cm(-1) A = 0.044403 B = 0.010254 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.432099 B = 2730.094815 C = 3330.591151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 S 0.046 5.954 3 C 0.348 3.652 4 N -0.594 5.594 5 C 0.029 3.971 6 C 0.082 3.918 7 N -0.570 5.570 8 C 0.546 3.454 9 O -0.531 6.531 10 C -0.527 4.527 11 H 0.075 0.925 12 C 0.085 3.915 13 N -0.754 5.754 14 Si 0.917 3.083 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.265 1.265 18 H 0.094 0.906 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 3.979 -0.110 6.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.348 4.348 2 S 0.275 5.725 3 C -0.035 4.035 4 N -0.329 5.329 5 C -0.104 4.104 6 C -0.044 4.044 7 N -0.304 5.304 8 C 0.354 3.646 9 O -0.411 6.411 10 C -0.562 4.562 11 H 0.093 0.907 12 C -0.137 4.137 13 N -0.382 5.382 14 Si 0.740 3.260 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.190 1.190 18 H 0.113 0.887 19 H 0.099 0.901 20 H 0.099 0.901 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.576 2.253 -0.067 6.014 hybrid contribution 0.797 1.989 -0.080 2.144 sum -4.779 4.242 -0.147 6.392 Atomic orbital electron populations 1.23727 1.00045 1.05040 1.06035 1.87006 1.00970 0.93436 1.91078 1.25485 0.86031 1.00148 0.91820 1.74798 1.26418 0.98836 1.32891 1.23040 0.91473 0.94127 1.01793 1.22605 0.97279 0.81873 1.02654 1.47694 1.04880 1.06633 1.71196 1.18443 0.81522 0.86834 0.77794 1.90639 1.84019 1.13251 1.53204 1.20847 0.88843 0.93948 1.52601 0.90709 1.25784 1.00648 0.94713 0.92540 1.69950 1.29205 1.06392 1.32640 0.86267 0.80266 0.79699 0.79722 1.18987 1.20192 1.19013 0.88749 0.90115 0.90130 0.90492 0.90459 0.90438 0.90616 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 9.83 101.05 0.99 -1.77 15 2 S 0.05 0.96 20.49 -107.50 -2.20 -1.25 15 3 C 0.35 7.85 7.79 -89.00 -0.69 7.15 15 4 N -0.59 -12.10 10.72 -60.32 -0.65 -12.74 15 5 C 0.03 0.50 8.03 -3.21 -0.03 0.47 15 6 C 0.08 1.58 6.50 -3.03 -0.02 1.56 15 7 N -0.57 -13.73 3.10 -116.75 -0.36 -14.10 15 8 C 0.55 15.28 7.72 -13.05 -0.10 15.18 15 9 O -0.53 -16.30 13.21 5.20 0.07 -16.23 15 10 C -0.53 -14.24 9.07 -35.67 -0.32 -14.57 15 11 H 0.07 1.84 7.18 -52.49 -0.38 1.46 15 12 C 0.09 2.25 5.50 -17.35 -0.10 2.16 15 13 N -0.75 -21.36 11.84 55.55 0.66 -20.71 15 14 Si 0.92 19.07 29.56 -169.99 -5.02 14.04 15 15 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 17 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 18 H 0.09 1.19 8.14 -51.92 -0.42 0.77 15 19 H 0.08 1.23 8.14 -51.92 -0.42 0.81 15 20 H 0.08 1.23 8.14 -51.92 -0.42 0.81 15 21 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.08 1.19 8.14 -51.92 -0.42 0.76 15 23 H 0.08 1.40 8.14 -51.93 -0.42 0.97 15 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.28 7.06 8.29 -40.82 -0.34 6.72 15 LS Contribution 237.13 15.07 3.57 3.57 Total: -1.00 -31.72 237.13 -6.67 -38.40 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -2.47 Total: -1.17 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -0.27 Total: 10.18 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.35 Total: -47.54 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.07 Total: -16.23 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.20 Total: -1.25 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.72 -6.67 -38.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306364487.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.962 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds