Wall clock time and date at job start Mon Mar 30 2020 20:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48501 * 109.47213 * 240.00111 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99739 * 3 2 1 7 7 C 1.40047 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99523 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27118 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 C 1.52999 * 109.47528 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.50615 * 297.74151 * 13 12 11 15 15 C 1.54094 * 110.56613 * 174.99708 * 13 12 11 16 16 O 1.45697 * 104.01164 * 241.42942 * 15 13 12 17 17 C 1.33778 * 109.47641 * 359.97438 * 16 15 13 18 18 O 1.21505 * 123.07090 * 180.02562 * 17 16 15 19 19 N 1.34005 * 113.85549 * 359.97438 * 17 16 15 20 20 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 21 21 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 22 22 H 1.09009 * 109.47182 * 300.00268 * 12 11 9 23 23 H 1.08998 * 109.47207 * 59.99494 * 12 11 9 24 24 H 1.08999 * 110.51842 * 0.06393 * 15 13 12 25 25 H 1.09003 * 110.51896 * 122.79306 * 15 13 12 26 26 H 0.97001 * 125.55693 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 6 2.2106 -6.0793 0.0195 14 1 2.8206 -6.0655 -0.8837 15 6 1.4698 -7.4240 0.1518 16 8 1.9728 -7.9825 1.3999 17 6 2.8608 -7.1401 1.9397 18 8 3.4350 -7.3635 2.9870 19 7 3.0598 -6.0277 1.2194 20 1 -0.4850 0.8400 -0.0004 21 1 2.9189 -3.6477 0.0070 22 1 0.5894 -4.9697 0.9028 23 1 0.5900 -4.9786 -0.8771 24 1 0.3934 -7.2630 0.2115 25 1 1.7133 -8.0784 -0.6853 26 1 3.6648 -5.3060 1.4518 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306442627.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:34 Heat of formation + Delta-G solvation = -145.763929 kcal Electronic energy + Delta-G solvation = -14026.924915 eV Core-core repulsion = 11297.480429 eV Total energy + Delta-G solvation = -2729.444486 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.64146 -39.43790 -38.38502 -36.61075 -34.76820 -34.07685 -31.29448 -28.71996 -26.51116 -23.51560 -23.17244 -21.69488 -19.49138 -19.03745 -18.22810 -17.61370 -17.29577 -16.42709 -16.14575 -15.88996 -15.20695 -14.94632 -14.69452 -14.31215 -13.74806 -13.45146 -13.14122 -12.87280 -12.66084 -12.59076 -12.06460 -11.92737 -11.72928 -10.91884 -10.44429 -9.89769 -9.53219 -8.29788 -6.85691 1.41789 1.44098 1.55699 1.55865 1.70146 2.24073 2.46672 2.57049 2.86308 3.48908 3.61744 3.63744 3.87591 4.22959 4.46324 4.57187 4.77985 4.89446 5.32341 5.72759 5.85738 6.14767 6.22694 6.23662 6.87296 6.97173 7.50619 8.47685 8.66342 Molecular weight = 214.08amu Principal moments of inertia in cm(-1) A = 0.057192 B = 0.006536 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.464211 B = 4282.830584 C = 4562.047113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.995 3.005 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.538 3.462 10 O -0.631 6.631 11 N -0.752 5.752 12 C 0.123 3.877 13 C 0.097 3.903 14 H 0.146 0.854 15 C 0.047 3.953 16 O -0.342 6.342 17 C 0.645 3.355 18 O -0.579 6.579 19 N -0.716 5.716 20 H 0.274 0.726 21 H 0.396 0.604 22 H 0.032 0.968 23 H 0.072 0.928 24 H 0.121 0.879 25 H 0.155 0.845 26 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -9.346 -4.348 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.176 1.176 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.610 4.610 8 H 0.108 0.892 9 C 0.342 3.658 10 O -0.518 6.518 11 N -0.408 5.408 12 C -0.002 4.002 13 C -0.008 4.008 14 H 0.164 0.836 15 C -0.027 4.027 16 O -0.251 6.251 17 C 0.398 3.602 18 O -0.468 6.468 19 N -0.387 5.387 20 H 0.084 0.916 21 H 0.230 0.770 22 H 0.050 0.950 23 H 0.090 0.910 24 H 0.139 0.861 25 H 0.173 0.827 26 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 5.397 -9.770 -3.795 11.789 hybrid contribution 0.601 1.230 0.214 1.386 sum 5.998 -8.539 -3.581 11.033 Atomic orbital electron populations 1.70170 1.09495 1.28996 1.36460 1.26931 0.95466 1.04917 0.91237 0.85100 0.78197 0.74948 0.80250 1.17638 1.20246 1.18112 1.21424 0.94857 0.90100 1.54651 0.89210 1.18555 0.86806 0.84376 0.76052 1.90573 1.16243 1.87911 1.57101 1.45653 1.09241 1.04408 1.81472 1.21441 0.94237 0.83473 1.01094 1.22824 0.92600 0.94849 0.90541 0.83609 1.24777 1.01172 0.92212 0.84504 1.87227 1.54698 1.43866 1.39337 1.18613 0.78637 0.80007 0.82944 1.91015 1.53385 1.78894 1.23517 1.46063 1.46223 1.21819 1.24636 0.91606 0.76989 0.94979 0.90960 0.86138 0.82692 0.71627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.98 11.83 21.84 0.26 -48.73 15 2 C 0.03 1.60 5.50 85.30 0.47 2.07 15 3 Si 1.00 39.49 29.56 68.60 2.03 41.52 15 4 H -0.25 -9.32 7.11 99.48 0.71 -8.62 15 5 H -0.28 -10.77 7.11 99.48 0.71 -10.06 15 6 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 7 C -0.57 -30.76 9.54 24.83 0.24 -30.53 15 8 H 0.09 4.24 7.85 -2.91 -0.02 4.21 15 9 C 0.54 29.08 7.75 86.36 0.67 29.75 15 10 O -0.63 -40.23 15.02 -4.33 -0.06 -40.29 15 11 N -0.75 -28.92 5.45 -467.41 -2.55 -31.47 15 12 C 0.12 3.75 5.21 86.38 0.45 4.20 15 13 C 0.10 1.84 3.84 45.25 0.17 2.02 15 14 H 0.15 1.80 8.14 -2.39 -0.02 1.78 15 15 C 0.05 0.72 7.88 72.35 0.57 1.29 15 16 O -0.34 -8.70 11.09 -47.38 -0.53 -9.22 15 17 C 0.64 19.42 9.16 129.91 1.19 20.60 15 18 O -0.58 -22.52 18.04 19.67 0.35 -22.17 15 19 N -0.72 -17.02 5.86 -569.83 -3.34 -20.36 15 20 H 0.27 14.89 8.29 -92.71 -0.77 14.12 15 21 H 0.40 12.47 8.10 -92.71 -0.75 11.72 15 22 H 0.03 1.16 8.14 -2.38 -0.02 1.14 15 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.12 1.67 7.73 -2.39 -0.02 1.65 15 25 H 0.16 1.05 8.14 -2.39 -0.02 1.03 15 26 H 0.44 9.90 8.70 -92.71 -0.81 9.10 15 Total: -1.00 -81.63 240.28 -0.40 -82.03 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.33 Total: 19.27 kcal Atomic # 6 Polarization: 25.66 SS G_CDS: 3.76 Total: 29.42 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -5.63 Total: -100.56 kcal Atomic # 8 Polarization: -71.45 SS G_CDS: -0.24 Total: -71.69 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -81.63 -0.40 -82.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306442627.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.734 kcal (2) G-P(sol) polarization free energy of solvation -81.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds