Wall clock time and date at job start Mon Mar 30 2020 20:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34560 * 119.50560 * 269.72314 * 10 9 7 12 12 O 1.21245 * 120.01897 * 4.43808 * 11 10 9 13 13 C 1.50774 * 119.99224 * 184.23054 * 11 10 9 14 14 C 1.53036 * 109.28916 * 326.19372 * 13 11 10 15 15 N 1.46412 * 109.52084 * 46.51247 * 14 13 11 16 16 C 1.34292 * 120.93010 * 324.15385 * 15 14 13 17 17 S 1.71199 * 119.20724 * 185.71023 * 16 15 14 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08999 * 109.61495 * 206.15804 * 13 11 10 22 22 H 1.09004 * 109.32577 * 86.04658 * 13 11 10 23 23 H 1.09001 * 109.45974 * 286.50331 * 14 13 11 24 24 H 1.09001 * 109.45819 * 166.52607 * 14 13 11 25 25 H 0.97003 * 119.53441 * 144.12225 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.6293 -4.1149 -1.1835 12 8 2.2895 -3.5954 -2.2250 13 6 3.5337 -5.3211 -1.2029 14 6 4.4561 -5.2809 0.0176 15 7 3.6714 -4.9701 1.2139 16 6 2.6327 -4.1208 1.1567 17 16 1.8378 -3.6745 2.6057 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 4.1334 -5.3141 -2.1130 22 1 2.9279 -6.2267 -1.1718 23 1 5.2168 -4.5137 -0.1272 24 1 4.9376 -6.2510 0.1409 25 1 3.9048 -5.3838 2.0597 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306561196.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:42 Heat of formation + Delta-G solvation = -11.147839 kcal Electronic energy + Delta-G solvation = -12479.931094 eV Core-core repulsion = 10199.076871 eV Total energy + Delta-G solvation = -2280.854223 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.02571 -37.56410 -35.29280 -32.56170 -31.61300 -27.96093 -25.22264 -24.20293 -22.73474 -18.71011 -18.44986 -17.64293 -16.80663 -15.98091 -15.33495 -14.75166 -14.45540 -14.07879 -13.47716 -13.12586 -12.46925 -12.17741 -11.47681 -11.45356 -10.98258 -10.86032 -10.71970 -10.28934 -9.85453 -9.64567 -8.73742 -8.46392 -7.40780 -6.84303 -6.06593 -4.10215 1.15738 2.28994 2.88410 3.15049 3.23401 3.32380 3.38758 3.43053 4.30332 4.34026 4.44298 4.75676 4.97253 5.19529 5.31333 5.43952 6.17110 6.41771 6.96989 7.05865 7.35996 7.78042 7.82397 8.06560 8.08384 8.85340 9.51639 11.03392 Molecular weight = 214.05amu Principal moments of inertia in cm(-1) A = 0.032129 B = 0.011713 C = 0.010085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.282600 B = 2389.992055 C = 2775.598059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.220 3.780 10 N -0.511 5.511 11 C 0.502 3.498 12 O -0.471 6.471 13 C -0.162 4.162 14 C 0.094 3.906 15 N -0.682 5.682 16 C 0.564 3.436 17 S -0.589 6.589 18 H 0.265 0.735 19 H 0.092 0.908 20 H 0.053 0.947 21 H 0.123 0.877 22 H 0.109 0.891 23 H 0.082 0.918 24 H 0.105 0.895 25 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.502 -12.254 -1.389 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.562 4.562 8 H 0.072 0.928 9 C 0.103 3.897 10 N -0.232 5.232 11 C 0.285 3.715 12 O -0.342 6.342 13 C -0.203 4.203 14 C -0.033 4.033 15 N -0.318 5.318 16 C 0.211 3.789 17 S -0.456 6.456 18 H 0.075 0.925 19 H 0.109 0.891 20 H 0.071 0.929 21 H 0.141 0.859 22 H 0.127 0.873 23 H 0.100 0.900 24 H 0.123 0.877 25 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 8.671 -11.519 -1.354 14.481 hybrid contribution 1.074 0.497 -0.500 1.285 sum 9.745 -11.023 -1.854 14.829 Atomic orbital electron populations 1.69934 1.05916 1.27123 1.49498 1.24813 0.94913 0.99066 0.94663 0.86365 0.79773 0.83138 0.77673 1.19951 1.20862 1.20606 1.21030 0.92823 0.89859 1.52523 0.92763 1.20345 0.87405 0.80025 1.01946 1.46322 1.41236 1.32708 1.02945 1.20950 0.81173 0.85253 0.84083 1.90759 1.53608 1.58582 1.31204 1.22273 0.99019 0.97938 1.01110 1.21857 0.93953 1.03489 0.84043 1.45268 1.28401 1.44761 1.13341 1.22240 0.83774 0.80550 0.92309 1.93304 1.63470 1.72234 1.16558 0.92548 0.89075 0.92917 0.85888 0.87266 0.89998 0.87668 0.72913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 15 2 C 0.07 2.00 5.46 -17.82 -0.10 1.90 15 3 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 15 4 H -0.27 -6.71 7.11 56.52 0.40 -6.30 15 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 15 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 7 C -0.52 -15.08 9.38 -34.44 -0.32 -15.41 15 8 H 0.05 1.57 7.81 -52.49 -0.41 1.16 15 9 C 0.22 5.86 4.69 -5.20 -0.02 5.83 15 10 N -0.51 -10.87 2.53 -118.81 -0.30 -11.17 15 11 C 0.50 9.26 7.48 -11.05 -0.08 9.18 15 12 O -0.47 -10.53 16.66 5.59 0.09 -10.44 15 13 C -0.16 -1.73 6.27 -27.83 -0.17 -1.91 15 14 C 0.09 0.82 7.25 -4.07 -0.03 0.79 15 15 N -0.68 -8.57 5.57 -62.31 -0.35 -8.91 15 16 C 0.56 10.69 7.52 -87.74 -0.66 10.03 15 17 S -0.59 -13.57 28.47 -107.50 -3.06 -16.63 15 18 H 0.26 7.49 8.31 -40.82 -0.34 7.16 15 19 H 0.09 2.61 6.23 -51.63 -0.32 2.29 15 20 H 0.05 1.51 7.44 -51.93 -0.39 1.12 15 21 H 0.12 1.04 8.14 -51.93 -0.42 0.61 15 22 H 0.11 0.95 8.14 -51.93 -0.42 0.52 15 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.11 0.45 8.14 -51.93 -0.42 0.03 15 25 H 0.43 4.39 8.75 -40.82 -0.36 4.03 15 LS Contribution 236.55 15.07 3.56 3.56 Total: -1.00 -35.80 236.55 -8.03 -43.82 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -2.30 Total: -1.99 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -1.39 Total: 10.42 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.09 Total: -46.08 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: -13.57 SS G_CDS: -3.06 Total: -16.63 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -35.80 -8.03 -43.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306561196.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.676 kcal (2) G-P(sol) polarization free energy of solvation -35.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds