Wall clock time and date at job start Mon Mar 30 2020 20:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00037 * 2 1 4 4 H 1.48504 * 109.47329 * 270.00000 * 3 2 1 5 5 H 1.48496 * 109.47139 * 30.00611 * 3 2 1 6 6 H 1.48502 * 109.47040 * 150.00180 * 3 2 1 7 7 C 1.38813 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00232 * 196.90934 * 7 2 1 9 9 N 1.36939 * 119.99945 * 16.91275 * 7 2 1 10 10 C 1.47146 * 120.98435 * 26.23761 * 9 7 2 11 11 C 1.53289 * 108.38602 * 129.44483 * 10 9 7 12 12 O 1.42962 * 109.22130 * 52.30349 * 11 10 9 13 13 C 1.42963 * 114.16955 * 297.41644 * 12 11 10 14 14 H 1.09002 * 109.51285 * 302.66267 * 13 12 11 15 15 C 1.52998 * 109.51420 * 182.55413 * 13 12 11 16 16 C 1.50707 * 109.46958 * 65.10788 * 15 13 12 17 17 N 1.34767 * 119.99746 * 179.97438 * 16 15 13 18 18 O 1.21277 * 119.99933 * 359.97438 * 16 15 13 19 19 C 1.47271 * 120.95466 * 206.21583 * 9 7 2 20 20 H 0.97000 * 120.00022 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.68001 * 9.72219 * 10 9 7 22 22 H 1.08998 * 109.68152 * 249.17120 * 10 9 7 23 23 H 1.08996 * 109.51529 * 292.38249 * 11 10 9 24 24 H 1.09004 * 109.55442 * 172.25044 * 11 10 9 25 25 H 1.09000 * 109.46857 * 185.09974 * 15 13 12 26 26 H 1.08997 * 109.47434 * 305.10286 * 15 13 12 27 27 H 0.97002 * 120.00397 * 0.02562 * 17 16 15 28 28 H 0.97001 * 119.99933 * 179.97438 * 17 16 15 29 29 H 1.09008 * 109.67056 * 110.84531 * 19 9 7 30 30 H 1.08999 * 109.74620 * 350.25720 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2226 0.2715 9 7 1.3699 -2.3623 -0.3461 10 6 0.1975 -2.3446 -1.2351 11 6 0.4250 -3.3654 -2.3557 12 8 0.7658 -4.6286 -1.7796 13 6 1.9821 -4.6202 -1.0282 14 1 2.8011 -4.2858 -1.6650 15 6 2.2762 -6.0316 -0.5161 16 6 2.5394 -6.9455 -1.6852 17 7 2.8235 -8.2458 -1.4734 18 8 2.4955 -6.5108 -2.8166 19 6 1.8351 -3.6643 0.1611 20 1 -0.4850 0.8400 0.0004 21 1 0.0768 -1.3497 -1.6637 22 1 -0.6955 -2.6123 -0.6703 23 1 1.2384 -3.0266 -2.9973 24 1 -0.4857 -3.4683 -2.9459 25 1 3.1530 -6.0079 0.1310 26 1 1.4187 -6.3999 0.0471 27 1 2.8582 -8.5935 -0.5686 28 1 2.9925 -8.8341 -2.2259 29 1 1.1068 -4.0649 0.8663 30 1 2.7986 -3.5436 0.6564 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331488382.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:56 Heat of formation + Delta-G solvation = -91.886871 kcal Electronic energy + Delta-G solvation = -14788.748695 eV Core-core repulsion = 12197.473588 eV Total energy + Delta-G solvation = -2591.275107 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.74908 -39.50526 -36.27095 -34.60132 -33.76456 -32.93195 -29.73779 -27.94148 -25.05033 -24.02065 -21.56926 -21.14747 -18.89136 -18.15253 -17.57265 -17.42750 -16.89667 -16.10617 -15.68808 -15.50826 -15.39819 -14.94605 -14.51710 -14.20271 -13.20146 -13.07808 -12.88088 -12.68726 -12.48109 -12.13716 -12.01739 -11.86078 -11.32568 -10.91708 -10.73763 -10.55731 -10.48668 -8.73764 -7.90350 -5.37744 1.46121 1.48536 1.57025 1.77663 2.46734 2.69853 2.92851 3.23998 3.55114 3.99182 4.05060 4.30437 4.42415 4.47612 4.61362 4.66227 4.75683 4.85528 4.94872 5.13441 5.27913 5.53806 5.59861 6.01097 6.29249 6.39968 6.59049 7.06134 7.49229 7.75208 8.29655 9.15771 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.059470 B = 0.007558 C = 0.007225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.709617 B = 3703.989443 C = 3874.458851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.618 5.618 10 C 0.148 3.852 11 C 0.054 3.946 12 O -0.389 6.389 13 C 0.092 3.908 14 H 0.037 0.963 15 C -0.126 4.126 16 C 0.515 3.485 17 N -0.837 5.837 18 O -0.589 6.589 19 C 0.117 3.883 20 H 0.252 0.748 21 H 0.065 0.935 22 H 0.005 0.995 23 H 0.032 0.968 24 H 0.101 0.899 25 H 0.143 0.857 26 H 0.120 0.880 27 H 0.419 0.581 28 H 0.405 0.595 29 H 0.030 0.970 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 -14.229 0.692 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.342 5.342 10 C 0.023 3.977 11 C -0.024 4.024 12 O -0.308 6.308 13 C 0.032 3.968 14 H 0.055 0.945 15 C -0.166 4.166 16 C 0.301 3.699 17 N -0.402 5.402 18 O -0.468 6.468 19 C -0.009 4.009 20 H 0.061 0.939 21 H 0.083 0.917 22 H 0.024 0.976 23 H 0.050 0.950 24 H 0.119 0.881 25 H 0.161 0.839 26 H 0.139 0.861 27 H 0.251 0.749 28 H 0.236 0.764 29 H 0.048 0.952 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.101 -13.821 0.073 14.732 hybrid contribution 0.237 0.975 0.061 1.005 sum 5.338 -12.846 0.134 13.911 Atomic orbital electron populations 1.70187 1.06763 1.26059 1.55233 1.25841 0.96137 1.01665 1.01048 0.85195 0.78151 0.79126 0.77548 1.21339 1.21935 1.18983 1.19583 0.93068 0.85733 1.41304 0.90916 1.44395 1.33664 1.02369 1.53790 1.21247 0.88304 0.97815 0.90378 1.23072 0.99742 0.84381 0.95169 1.87770 1.41826 1.31586 1.69602 1.22287 0.86620 0.95287 0.92556 0.94469 1.21719 1.06430 0.91529 0.96903 1.20846 0.74719 0.83969 0.90386 1.43654 1.73454 1.09310 1.13774 1.90746 1.52743 1.76771 1.26569 1.21784 0.99005 0.85840 0.94245 0.93928 0.91686 0.97645 0.94986 0.88080 0.83886 0.86144 0.74923 0.76394 0.95229 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.22 11.14 21.65 0.24 -55.98 16 2 C -0.05 -2.92 4.95 84.86 0.42 -2.50 16 3 Si 0.97 45.19 29.59 68.60 2.03 47.22 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.27 -14.97 9.65 84.03 0.81 -14.16 16 8 H 0.07 3.91 7.88 -2.91 -0.02 3.88 16 9 N -0.62 -32.44 3.05 -697.25 -2.13 -34.57 16 10 C 0.15 7.67 5.45 86.35 0.47 8.14 16 11 C 0.05 2.40 6.98 72.08 0.50 2.91 16 12 O -0.39 -16.62 9.63 -135.33 -1.30 -17.92 16 13 C 0.09 3.46 2.32 30.69 0.07 3.53 16 14 H 0.04 1.56 7.96 -2.39 -0.02 1.54 16 15 C -0.13 -3.10 5.41 29.85 0.16 -2.94 16 16 C 0.52 13.78 7.98 87.66 0.70 14.48 16 17 N -0.84 -12.66 8.87 -173.54 -1.54 -14.20 16 18 O -0.59 -22.70 16.26 10.63 0.17 -22.53 16 19 C 0.12 4.86 6.03 86.33 0.52 5.38 16 20 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 21 H 0.06 3.70 6.14 -2.39 -0.01 3.68 16 22 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 23 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.10 3.93 8.14 -2.38 -0.02 3.91 16 25 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.42 3.02 8.83 -92.71 -0.82 2.20 16 28 H 0.40 5.45 8.93 -92.71 -0.83 4.62 16 29 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.08 2.89 7.96 -2.39 -0.02 2.87 16 Total: -1.00 -75.83 253.49 0.64 -75.18 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -0.49 Total: 7.95 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 3.66 Total: 14.83 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.43 Total: -104.75 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -1.13 Total: -40.45 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.83 0.64 -75.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331488382.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.703 kcal (2) G-P(sol) polarization free energy of solvation -75.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds