Wall clock time and date at job start Mon Mar 30 2020 20:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47181 * 2 1 4 4 O 1.42896 * 109.46568 * 240.00264 * 2 1 3 5 5 C 1.53000 * 109.47119 * 120.00069 * 2 1 3 6 6 H 1.09005 * 109.49441 * 59.93402 * 5 2 1 7 7 C 1.53042 * 109.49457 * 179.97438 * 5 2 1 8 8 C 1.53043 * 109.52588 * 181.32346 * 7 5 2 9 9 H 1.08997 * 109.50037 * 178.68105 * 8 7 5 10 10 N 1.46901 * 109.49687 * 58.58382 * 8 7 5 11 11 C 1.53195 * 109.31393 * 298.61969 * 8 7 5 12 12 N 1.46926 * 108.76708 * 54.65459 * 11 8 7 13 13 C 1.36931 * 120.63289 * 126.40565 * 12 11 8 14 14 H 1.08001 * 119.99988 * 207.66278 * 13 12 11 15 15 C 1.38809 * 119.99891 * 27.66355 * 13 12 11 16 16 N 1.31618 * 120.00290 * 17.36942 * 15 13 12 17 17 Si 1.86802 * 120.00128 * 197.36428 * 15 13 12 18 18 H 1.48497 * 109.46839 * 60.00142 * 17 15 13 19 19 H 1.48500 * 109.47277 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47172 * 300.00420 * 17 15 13 21 21 C 1.46935 * 118.73705 * 306.38707 * 12 11 8 22 22 H 1.09002 * 109.47157 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46456 * 299.99726 * 1 2 3 24 24 H 1.08995 * 109.47417 * 59.99763 * 1 2 3 25 25 H 0.96698 * 114.00934 * 59.99649 * 4 2 1 26 26 H 1.08999 * 109.46165 * 301.33981 * 7 5 2 27 27 H 1.08995 * 109.45956 * 61.31659 * 7 5 2 28 28 H 1.00897 * 110.99978 * 180.02562 * 10 8 7 29 29 H 1.00904 * 110.99811 * 303.94874 * 10 8 7 30 30 H 1.08998 * 109.59709 * 294.86466 * 11 8 7 31 31 H 1.09001 * 109.58746 * 174.43515 * 11 8 7 32 32 H 0.96998 * 120.00359 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.58434 * 293.82071 * 21 12 11 34 34 H 1.08996 * 109.58552 * 173.39307 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 1 1.6760 -1.7487 1.2502 7 6 3.5705 -0.7221 1.2494 8 6 4.0814 -1.4721 2.4818 9 1 5.1711 -1.4927 2.4693 10 7 3.5642 -2.8470 2.4684 11 6 3.5983 -0.7561 3.7471 12 7 2.1364 -0.6224 3.6855 13 6 1.3508 -1.0715 4.7132 14 1 0.3370 -1.3890 4.5189 15 6 1.8575 -1.1187 6.0046 16 7 2.9377 -0.4331 6.3133 17 14 1.0061 -2.1553 7.3047 18 1 0.9909 -3.5761 6.8731 19 1 1.7393 -2.0369 8.5906 20 1 -0.3885 -1.6775 7.4836 21 6 1.5335 0.0030 2.5004 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.7209 -0.2702 -1.9980 26 1 3.9335 -1.2154 0.3478 27 1 3.9342 0.3051 1.2730 28 1 3.8875 -3.3628 3.2730 29 1 2.5565 -2.8538 2.4160 30 1 4.0537 0.2325 3.8041 31 1 3.8752 -1.3394 4.6253 32 1 3.2916 -0.4658 7.2158 33 1 1.8205 1.0536 2.4558 34 1 0.4481 -0.0794 2.5561 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108005882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:05 Heat of formation + Delta-G solvation = -40.630525 kcal Electronic energy + Delta-G solvation = -15503.745067 eV Core-core repulsion = 13050.525696 eV Total energy + Delta-G solvation = -2453.219370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.73136 -36.55319 -33.45080 -32.64689 -30.55185 -29.01474 -27.28764 -25.26922 -23.36315 -21.68996 -20.32392 -18.56087 -16.98668 -16.71366 -15.38502 -14.71566 -14.42197 -14.13010 -13.68730 -13.46662 -13.07620 -12.66809 -12.43948 -12.26148 -11.79109 -11.41477 -11.17060 -10.96989 -10.95344 -10.63406 -10.34584 -10.27666 -9.96825 -9.72495 -9.49392 -9.32349 -8.53872 -7.88689 -6.67885 -5.82853 -3.26984 3.34425 3.40851 3.41693 4.37856 4.56729 5.08935 5.27494 5.31160 5.42514 5.53851 5.60624 5.78167 5.83288 5.90700 6.09007 6.29329 6.32797 6.36777 6.41071 6.44535 6.72515 6.79704 6.92978 7.03118 7.26779 7.56667 7.73268 7.88854 8.05527 8.31915 8.39388 9.15505 9.78975 10.35768 11.23911 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039154 B = 0.009765 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.947697 B = 2866.623924 C = 3194.951868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.107 3.893 3 H 0.049 0.951 4 O -0.565 6.565 5 C -0.096 4.096 6 H 0.076 0.924 7 C -0.091 4.091 8 C 0.061 3.939 9 H 0.063 0.937 10 N -0.838 5.838 11 C 0.139 3.861 12 N -0.588 5.588 13 C -0.257 4.257 14 H 0.065 0.935 15 C 0.003 3.997 16 N -0.901 5.901 17 Si 0.902 3.098 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.283 1.283 21 C 0.151 3.849 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.367 0.633 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.330 0.670 29 H 0.342 0.658 30 H 0.017 0.983 31 H 0.087 0.913 32 H 0.254 0.746 33 H 0.017 0.983 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 0.647 -10.154 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.047 3.953 3 H 0.067 0.933 4 O -0.369 6.369 5 C -0.117 4.117 6 H 0.094 0.906 7 C -0.129 4.129 8 C -0.053 4.053 9 H 0.081 0.919 10 N -0.367 5.367 11 C 0.012 3.988 12 N -0.311 5.311 13 C -0.386 4.386 14 H 0.083 0.917 15 C -0.195 4.195 16 N -0.544 5.544 17 Si 0.732 3.268 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.024 3.976 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.213 0.787 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.156 0.844 30 H 0.035 0.965 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.959 0.206 -10.189 10.236 hybrid contribution -1.163 0.299 1.297 1.767 sum -2.122 0.506 -8.892 9.156 Atomic orbital electron populations 1.22546 0.96989 1.02680 1.02033 1.21844 0.92335 0.95053 0.86021 0.93314 1.86591 1.77030 1.57681 1.15615 1.21700 0.96524 1.00548 0.92908 0.90565 1.21346 0.94777 0.98963 0.97849 1.22062 0.97594 0.89156 0.96459 0.91876 1.59268 1.16266 1.13886 1.47287 1.21603 0.83661 0.97954 0.95620 1.43988 1.01917 1.68414 1.16763 1.19136 0.97067 1.36335 0.86065 0.91682 1.25044 0.98380 0.99181 0.96944 1.70037 1.24420 1.40764 1.19228 0.86373 0.78915 0.80581 0.80917 1.20973 1.21649 1.20894 1.20963 0.96520 0.93858 0.86246 0.91942 0.91058 0.93185 0.78748 0.92105 0.93100 0.85918 0.84408 0.96490 0.89482 0.93560 0.96550 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 9.19 37.16 0.34 -2.05 16 2 C 0.11 1.57 3.16 -26.73 -0.08 1.49 16 3 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 4 O -0.56 -8.08 12.62 -35.23 -0.44 -8.53 16 5 C -0.10 -1.74 1.82 -90.50 -0.16 -1.90 16 6 H 0.08 1.49 6.49 -51.93 -0.34 1.15 16 7 C -0.09 -1.70 4.77 -26.69 -0.13 -1.83 16 8 C 0.06 1.22 3.71 -67.59 -0.25 0.97 16 9 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 10 N -0.84 -16.43 9.22 -4.56 -0.04 -16.47 16 11 C 0.14 3.30 4.91 -3.71 -0.02 3.29 16 12 N -0.59 -14.37 2.57 -172.32 -0.44 -14.81 16 13 C -0.26 -6.87 9.59 -15.06 -0.14 -7.01 16 14 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 15 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 16 N -0.90 -25.87 11.19 55.49 0.62 -25.25 16 17 Si 0.90 21.46 29.59 -169.99 -5.03 16.44 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.15 3.11 5.28 -3.71 -0.02 3.09 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.07 0.95 6.57 -51.92 -0.34 0.61 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.37 3.47 9.08 45.56 0.41 3.88 16 26 H 0.06 1.14 7.64 -51.93 -0.40 0.74 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.33 6.36 9.04 -39.29 -0.36 6.01 16 29 H 0.34 7.05 6.55 -39.29 -0.26 6.80 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 1.12 6.55 -51.93 -0.34 0.78 16 LS Contribution 264.98 15.07 3.99 3.99 Total: -1.00 -29.31 264.98 -6.33 -35.64 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -4.44 Total: 12.94 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.55 Total: -3.95 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.14 Total: -56.53 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.44 Total: -8.53 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.31 -6.33 -35.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.989 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds