Wall clock time and date at job start Mon Mar 30 2020 20:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47181 * 2 1 4 4 O 1.42896 * 109.46568 * 240.00264 * 2 1 3 5 5 C 1.53000 * 109.47119 * 120.00069 * 2 1 3 6 6 H 1.09005 * 109.49441 * 59.93402 * 5 2 1 7 7 C 1.53042 * 109.49457 * 179.97438 * 5 2 1 8 8 C 1.53043 * 109.52588 * 181.32346 * 7 5 2 9 9 H 1.08997 * 109.50037 * 178.68105 * 8 7 5 10 10 N 1.46901 * 109.49687 * 58.58382 * 8 7 5 11 11 C 1.53195 * 109.31393 * 298.61969 * 8 7 5 12 12 N 1.46926 * 108.76708 * 54.65459 * 11 8 7 13 13 C 1.36931 * 120.63289 * 126.40565 * 12 11 8 14 14 H 1.08001 * 119.99988 * 207.66278 * 13 12 11 15 15 C 1.38809 * 119.99891 * 27.66355 * 13 12 11 16 16 N 1.31618 * 120.00290 * 17.36942 * 15 13 12 17 17 Si 1.86802 * 120.00128 * 197.36428 * 15 13 12 18 18 H 1.48497 * 109.46839 * 60.00142 * 17 15 13 19 19 H 1.48500 * 109.47277 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47172 * 300.00420 * 17 15 13 21 21 C 1.46935 * 118.73705 * 306.38707 * 12 11 8 22 22 H 1.09002 * 109.47157 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46456 * 299.99726 * 1 2 3 24 24 H 1.08995 * 109.47417 * 59.99763 * 1 2 3 25 25 H 0.96698 * 114.00934 * 59.99649 * 4 2 1 26 26 H 1.08999 * 109.46165 * 301.33981 * 7 5 2 27 27 H 1.08995 * 109.45956 * 61.31659 * 7 5 2 28 28 H 1.00897 * 110.99978 * 180.02562 * 10 8 7 29 29 H 1.00904 * 110.99811 * 303.94874 * 10 8 7 30 30 H 1.08998 * 109.59709 * 294.86466 * 11 8 7 31 31 H 1.09001 * 109.58746 * 174.43515 * 11 8 7 32 32 H 0.96998 * 120.00359 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.58434 * 293.82071 * 21 12 11 34 34 H 1.08996 * 109.58552 * 173.39307 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 1 1.6760 -1.7487 1.2502 7 6 3.5705 -0.7221 1.2494 8 6 4.0814 -1.4721 2.4818 9 1 5.1711 -1.4927 2.4693 10 7 3.5642 -2.8470 2.4684 11 6 3.5983 -0.7561 3.7471 12 7 2.1364 -0.6224 3.6855 13 6 1.3508 -1.0715 4.7132 14 1 0.3370 -1.3890 4.5189 15 6 1.8575 -1.1187 6.0046 16 7 2.9377 -0.4331 6.3133 17 14 1.0061 -2.1553 7.3047 18 1 0.9909 -3.5761 6.8731 19 1 1.7393 -2.0369 8.5906 20 1 -0.3885 -1.6775 7.4836 21 6 1.5335 0.0030 2.5004 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.7209 -0.2702 -1.9980 26 1 3.9335 -1.2154 0.3478 27 1 3.9342 0.3051 1.2730 28 1 3.8875 -3.3628 3.2730 29 1 2.5565 -2.8538 2.4160 30 1 4.0537 0.2325 3.8041 31 1 3.8752 -1.3394 4.6253 32 1 3.2916 -0.4658 7.2158 33 1 1.8205 1.0536 2.4558 34 1 0.4481 -0.0794 2.5561 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108005882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:05 Heat of formation + Delta-G solvation = -63.231784 kcal Electronic energy + Delta-G solvation = -15504.725131 eV Core-core repulsion = 13050.525696 eV Total energy + Delta-G solvation = -2454.199435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.26296 -37.89205 -35.32323 -34.12094 -32.37288 -30.38142 -28.92156 -27.21493 -24.76844 -23.53077 -21.74713 -20.18334 -18.74280 -18.02115 -17.15391 -16.49308 -15.81001 -15.76847 -15.17597 -15.04196 -14.79246 -14.39437 -14.00306 -13.44866 -13.24320 -13.07116 -12.89665 -12.73603 -12.47177 -12.28002 -12.14822 -12.06349 -11.56155 -11.29022 -10.97782 -10.70687 -10.58458 -9.58714 -8.65994 -7.88705 -5.35875 1.45113 1.47446 1.53842 2.47679 3.23211 3.35516 3.70166 3.86232 3.94254 4.04904 4.23967 4.41732 4.46798 4.53118 4.66219 4.73968 4.80966 4.99172 5.06228 5.07668 5.14968 5.24271 5.37776 5.47315 5.53812 5.60164 5.65779 6.32092 6.42117 6.66791 7.03156 7.11239 7.81646 8.34116 9.15395 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039154 B = 0.009765 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.947697 B = 2866.623924 C = 3194.951868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.113 3.887 3 H 0.058 0.942 4 O -0.579 6.579 5 C -0.087 4.087 6 H 0.063 0.937 7 C -0.085 4.085 8 C 0.068 3.932 9 H 0.073 0.927 10 N -0.828 5.828 11 C 0.149 3.851 12 N -0.603 5.603 13 C -0.262 4.262 14 H 0.068 0.932 15 C -0.048 4.048 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.277 1.277 19 H -0.297 1.297 20 H -0.276 1.276 21 C 0.151 3.849 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.391 0.609 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.331 0.669 29 H 0.337 0.663 30 H -0.008 1.008 31 H 0.057 0.943 32 H 0.249 0.751 33 H 0.013 0.987 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 0.387 -11.657 11.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.054 3.946 3 H 0.076 0.924 4 O -0.387 6.387 5 C -0.107 4.107 6 H 0.081 0.919 7 C -0.123 4.123 8 C -0.045 4.045 9 H 0.091 0.909 10 N -0.356 5.356 11 C 0.022 3.978 12 N -0.326 5.326 13 C -0.392 4.392 14 H 0.086 0.914 15 C -0.243 4.243 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.203 1.203 19 H -0.223 1.223 20 H -0.202 1.202 21 C 0.025 3.975 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.098 0.902 25 H 0.240 0.760 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.151 0.849 30 H 0.010 0.990 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.821 -0.052 -11.742 11.883 hybrid contribution -0.903 0.410 1.701 1.969 sum -2.723 0.357 -10.041 10.410 Atomic orbital electron populations 1.22489 0.95499 1.02585 1.03176 1.21640 0.93368 0.94662 0.84914 0.92410 1.86519 1.77348 1.58217 1.16567 1.21496 0.95963 0.99766 0.93499 0.91895 1.21294 0.95221 0.98881 0.96912 1.21975 0.98149 0.89086 0.95326 0.90872 1.59296 1.15849 1.13336 1.47162 1.21426 0.83608 0.96437 0.96370 1.44195 1.02037 1.68913 1.17424 1.19442 0.97340 1.35612 0.86769 0.91446 1.25758 0.99263 1.00432 0.98887 1.70190 1.26047 1.42425 1.19234 0.85372 0.77935 0.79182 0.78127 1.20348 1.22318 1.20227 1.21059 0.96697 0.93666 0.86041 0.92635 0.91770 0.90234 0.76012 0.91540 0.92740 0.85791 0.84917 0.99013 0.92510 0.94176 0.96897 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.13 9.19 71.98 0.66 -3.47 16 2 C 0.11 3.04 3.16 30.60 0.10 3.13 16 3 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 4 O -0.58 -14.65 12.62 -148.98 -1.88 -16.53 16 5 C -0.09 -2.99 1.82 -10.72 -0.02 -3.01 16 6 H 0.06 2.37 6.49 -2.38 -0.02 2.35 16 7 C -0.09 -3.03 4.77 30.62 0.15 -2.89 16 8 C 0.07 2.69 3.71 45.00 0.17 2.86 16 9 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 10 N -0.83 -31.76 9.22 -168.35 -1.55 -33.31 16 11 C 0.15 7.21 4.91 86.36 0.42 7.63 16 12 N -0.60 -29.55 2.57 -699.09 -1.80 -31.35 16 13 C -0.26 -14.03 9.59 84.03 0.81 -13.22 16 14 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 15 C -0.05 -2.62 4.91 84.86 0.42 -2.21 16 16 N -0.93 -54.77 11.19 21.65 0.24 -54.53 16 17 Si 0.97 44.40 29.59 68.60 2.03 46.43 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 19 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 C 0.15 6.12 5.28 86.36 0.46 6.58 16 22 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.06 1.56 6.57 -2.38 -0.02 1.55 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.39 5.88 9.08 -74.06 -0.67 5.20 16 26 H 0.07 2.33 7.64 -2.39 -0.02 2.31 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.33 12.62 9.04 -89.70 -0.81 11.81 16 29 H 0.34 13.64 6.55 -89.69 -0.59 13.06 16 30 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.06 3.09 6.04 -2.39 -0.01 3.07 16 32 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 2.36 6.55 -2.39 -0.02 2.35 16 Total: -1.00 -62.05 264.98 -0.76 -62.82 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.96 Total: 31.08 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 3.15 Total: -4.61 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -3.11 Total: -119.18 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -1.88 Total: -16.53 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -62.05 -0.76 -62.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.415 kcal (2) G-P(sol) polarization free energy of solvation -62.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds