Wall clock time and date at job start Mon Mar 30 2020 20:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 119.99719 * 2 1 4 4 H 1.48492 * 109.47529 * 274.90275 * 3 2 1 5 5 H 1.48501 * 109.47207 * 34.90313 * 3 2 1 6 6 H 1.48502 * 109.46976 * 154.89875 * 3 2 1 7 7 C 1.38810 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00832 * 339.75534 * 7 2 1 9 9 N 1.36946 * 119.99640 * 159.75596 * 7 2 1 10 10 C 1.46923 * 120.62921 * 332.78940 * 9 7 2 11 11 C 1.53194 * 108.77377 * 233.63232 * 10 9 7 12 12 C 1.53045 * 109.31091 * 305.36174 * 11 10 9 13 13 C 1.53034 * 109.53616 * 61.36556 * 12 11 10 14 14 H 1.09007 * 109.49574 * 58.58829 * 13 12 11 15 15 N 1.46899 * 109.52754 * 178.66458 * 13 12 11 16 16 C 1.46896 * 111.00444 * 204.85642 * 15 13 12 17 17 C 1.53007 * 109.47170 * 179.97438 * 16 15 13 18 18 O 1.42895 * 109.46836 * 64.99865 * 17 16 15 19 19 C 1.46923 * 120.63168 * 152.80915 * 9 7 2 20 20 H 0.96996 * 120.00641 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.59157 * 353.41557 * 10 9 7 22 22 H 1.08993 * 109.58933 * 113.84122 * 10 9 7 23 23 H 1.08996 * 109.50052 * 65.31395 * 11 10 9 24 24 H 1.09001 * 109.49474 * 185.41347 * 11 10 9 25 25 H 1.09003 * 109.45891 * 301.34464 * 12 11 10 26 26 H 1.08999 * 109.44764 * 181.38361 * 12 11 10 27 27 H 1.00902 * 110.99760 * 80.89890 * 15 13 12 28 28 H 1.08995 * 109.47261 * 300.00134 * 16 15 13 29 29 H 1.08997 * 109.47115 * 60.00191 * 16 15 13 30 30 H 1.08997 * 109.46819 * 184.99663 * 17 16 15 31 31 H 1.09001 * 109.46980 * 305.00363 * 17 16 15 32 32 H 0.96705 * 113.99891 * 179.97438 * 18 17 16 33 33 H 1.08998 * 109.58620 * 246.15848 * 19 9 7 34 34 H 1.08997 * 109.58368 * 6.44134 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3940 2.1063 -1.3948 5 1 1.5032 2.6205 0.8011 6 1 3.5956 1.4125 0.5940 7 6 2.0102 -1.2022 -0.0005 8 1 1.5204 -2.1088 0.3227 9 7 3.3162 -1.2386 -0.4109 10 6 3.8268 -0.2512 -1.3717 11 6 4.4774 -0.9937 -2.5431 12 6 5.5398 -1.9552 -2.0054 13 6 4.8795 -2.9859 -1.0870 14 1 4.1154 -3.5307 -1.6417 15 7 5.8943 -3.9279 -0.5964 16 6 5.2857 -5.2136 -0.2295 17 6 6.3714 -6.1663 0.2751 18 8 6.9301 -5.6532 1.4860 19 6 4.2334 -2.2660 0.1008 20 1 -0.4851 0.8400 -0.0004 21 1 3.0031 0.3608 -1.7394 22 1 4.5672 0.3835 -0.8849 23 1 3.7171 -1.5572 -3.0840 24 1 4.9447 -0.2742 -3.2154 25 1 6.2865 -1.3939 -1.4437 26 1 6.0213 -2.4668 -2.8387 27 1 6.4066 -3.5358 0.1794 28 1 4.5472 -5.0549 0.5563 29 1 4.7992 -5.6477 -1.1029 30 1 5.9351 -7.1472 0.4633 31 1 7.1550 -6.2553 -0.4774 32 1 7.6265 -6.2077 1.8639 33 1 5.0069 -1.7957 0.7078 34 1 3.6783 -2.9820 0.7068 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108133342.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:11 Heat of formation + Delta-G solvation = -30.742739 kcal Electronic energy + Delta-G solvation = -14992.653281 eV Core-core repulsion = 12539.862677 eV Total energy + Delta-G solvation = -2452.790604 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.41800 -37.03363 -34.75269 -32.58465 -30.78149 -29.96240 -26.85544 -25.20460 -22.38738 -21.71659 -21.43719 -19.44919 -17.57706 -16.72681 -15.62059 -15.47225 -14.83488 -14.14495 -14.00740 -13.73134 -13.20189 -13.05077 -12.99660 -12.31837 -12.04342 -11.86628 -11.40453 -11.28808 -10.78295 -10.72821 -10.51739 -10.12854 -10.05962 -9.82813 -9.65900 -9.41516 -8.72413 -8.09939 -6.89525 -5.92817 -3.28518 3.34512 3.50299 3.54114 4.24874 4.35824 4.55531 5.07396 5.15011 5.28504 5.31457 5.42333 5.46406 5.58184 5.74853 5.85511 5.92805 5.95790 6.05949 6.25048 6.38191 6.47590 6.54689 6.65041 6.66834 6.78465 6.96585 7.35212 7.54045 7.71160 7.98797 8.34366 8.96478 9.74378 10.12654 11.23244 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.041551 B = 0.008090 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.709732 B = 3460.225777 C = 3760.646121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.885 3.115 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.125 3.875 11 C -0.135 4.135 12 C -0.095 4.095 13 C 0.067 3.933 14 H 0.076 0.924 15 N -0.684 5.684 16 C 0.057 3.943 17 C 0.077 3.923 18 O -0.574 6.574 19 C 0.127 3.873 20 H 0.262 0.738 21 H 0.070 0.930 22 H 0.025 0.975 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.345 0.655 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.376 0.624 33 H 0.021 0.979 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.206 -8.928 -1.839 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.715 3.285 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.101 0.899 9 N -0.328 5.328 10 C -0.001 4.001 11 C -0.175 4.175 12 C -0.133 4.133 13 C -0.044 4.044 14 H 0.094 0.906 15 N -0.315 5.315 16 C -0.072 4.072 17 C -0.001 4.001 18 O -0.379 6.379 19 C 0.000 4.000 20 H 0.072 0.928 21 H 0.088 0.912 22 H 0.043 0.957 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.163 0.837 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.223 0.777 33 H 0.039 0.961 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.776 -8.589 -2.558 15.606 hybrid contribution 0.285 0.729 0.926 1.212 sum 13.062 -7.860 -1.633 15.332 Atomic orbital electron populations 1.69832 1.05721 1.26526 1.53234 1.25267 0.95242 0.97614 0.99491 0.86907 0.80081 0.84539 0.76923 1.21642 1.23197 1.19523 1.18927 0.84749 0.94715 1.40432 0.89865 1.44284 1.08307 1.32726 1.47463 1.21354 0.97086 0.91965 0.89679 1.22027 0.98209 0.98568 0.98688 1.21336 0.97377 0.96202 0.98367 1.22138 0.92506 0.92684 0.97085 0.90588 1.60708 1.26787 1.03952 1.40047 1.21991 0.95098 0.90857 0.99300 1.22281 0.96128 0.95679 0.85993 1.86503 1.57372 1.53004 1.40980 1.21581 0.92910 0.91661 0.93871 0.92794 0.91152 0.95740 0.91814 0.92655 0.92811 0.92513 0.83716 0.94205 0.89997 0.93603 0.92949 0.77749 0.96111 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.97 55.49 0.78 -27.67 16 2 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 3 Si 0.88 23.01 24.35 -169.99 -4.14 18.87 16 4 H -0.29 -7.23 6.70 56.52 0.38 -6.85 16 5 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 6 H -0.27 -6.94 6.45 56.52 0.36 -6.57 16 7 C -0.26 -7.50 10.04 -15.06 -0.15 -7.65 16 8 H 0.08 2.56 8.05 -52.49 -0.42 2.14 16 9 N -0.60 -14.93 2.77 -172.33 -0.48 -15.41 16 10 C 0.12 2.82 4.19 -3.71 -0.02 2.81 16 11 C -0.14 -2.50 6.08 -26.61 -0.16 -2.66 16 12 C -0.09 -1.59 5.49 -26.69 -0.15 -1.73 16 13 C 0.07 1.17 2.61 -67.60 -0.18 0.99 16 14 H 0.08 1.42 7.80 -51.93 -0.41 1.01 16 15 N -0.68 -10.27 6.25 -106.60 -0.67 -10.93 16 16 C 0.06 0.77 5.91 -3.82 -0.02 0.74 16 17 C 0.08 0.82 7.39 37.16 0.27 1.09 16 18 O -0.57 -6.46 13.18 -35.23 -0.46 -6.92 16 19 C 0.13 2.66 5.77 -3.71 -0.02 2.64 16 20 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 21 H 0.07 1.73 4.49 -51.93 -0.23 1.50 16 22 H 0.02 0.55 6.98 -51.93 -0.36 0.19 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.34 5.29 7.98 -39.29 -0.31 4.98 16 28 H 0.04 0.60 7.56 -51.93 -0.39 0.20 16 29 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.38 2.38 9.12 45.56 0.42 2.80 16 33 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 34 H 0.06 1.23 7.41 -51.93 -0.38 0.85 16 LS Contribution 266.16 15.07 4.01 4.01 Total: -1.00 -32.13 266.16 -6.14 -38.27 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.67 Total: 2.97 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.51 Total: -3.19 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.37 Total: -54.01 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.46 Total: -6.92 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.14 Total: 18.87 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.13 -6.14 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108133342.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.527 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds