Wall clock time and date at job start Mon Mar 30 2020 20:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99759 * 2 1 4 4 H 1.48503 * 109.46910 * 269.99704 * 3 2 1 5 5 H 1.48500 * 109.47216 * 29.99899 * 3 2 1 6 6 H 1.48497 * 109.47269 * 149.99875 * 3 2 1 7 7 C 1.37873 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99789 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00057 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00314 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47457 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47264 * 64.99865 * 12 11 10 14 14 C 1.42901 * 114.00134 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47091 * 179.97438 * 14 13 12 16 16 C 1.53782 * 113.61382 * 274.14037 * 15 14 13 17 17 C 1.53957 * 87.01833 * 220.04619 * 16 15 14 18 18 C 1.53775 * 87.11127 * 25.36197 * 17 16 15 19 19 H 0.97006 * 120.00316 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47551 * 60.00178 * 9 7 2 21 21 H 1.09004 * 109.47507 * 299.99841 * 9 7 2 22 22 H 1.09004 * 109.47487 * 59.99783 * 11 10 9 23 23 H 1.09002 * 109.46902 * 300.00077 * 11 10 9 24 24 H 1.09001 * 109.47289 * 304.99698 * 12 11 10 25 25 H 1.09004 * 109.47261 * 184.99954 * 12 11 10 26 26 H 1.08994 * 109.47036 * 300.00109 * 14 13 12 27 27 H 1.09002 * 109.46796 * 60.00253 * 14 13 12 28 28 H 1.09005 * 112.84842 * 45.33488 * 15 14 13 29 29 H 1.08995 * 113.61269 * 334.56495 * 16 15 14 30 30 H 1.08999 * 113.61463 * 105.47489 * 16 15 14 31 31 H 1.08996 * 113.54003 * 270.81243 * 17 16 15 32 32 H 1.09001 * 113.67013 * 139.93118 * 17 16 15 33 33 H 1.08999 * 113.61881 * 220.09083 * 18 17 16 34 34 H 1.09007 * 113.69347 * 89.19852 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 8 3.9879 -2.5411 0.0010 11 6 5.4124 -2.6540 0.0021 12 6 5.8070 -4.1322 0.0025 13 8 5.3806 -4.7394 -1.2188 14 6 5.7025 -6.1279 -1.3210 15 6 5.2011 -6.6705 -2.6607 16 6 3.7325 -7.1258 -2.6302 17 6 4.1669 -8.3151 -3.5060 18 6 5.5727 -8.1421 -2.9075 19 1 -0.4851 0.8401 -0.0004 20 1 3.8745 -0.6799 0.8911 21 1 3.8752 -0.6803 -0.8889 22 1 5.8145 -2.1708 0.8926 23 1 5.8159 -2.1701 -0.8874 24 1 5.3306 -4.6352 0.8440 25 1 6.8898 -4.2193 0.0929 26 1 6.7831 -6.2559 -1.2583 27 1 5.2242 -6.6726 -0.5069 28 1 5.4374 -6.0141 -3.4983 29 1 3.3864 -7.4173 -1.6386 30 1 3.0517 -6.4384 -3.1322 31 1 4.1191 -8.1087 -4.5752 32 1 3.6893 -9.2564 -3.2339 33 1 6.3755 -8.2740 -3.6329 34 1 5.7321 -8.7117 -1.9918 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400760668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:48 Heat of formation + Delta-G solvation = -105.664863 kcal Electronic energy + Delta-G solvation = -14080.823234 eV Core-core repulsion = 11592.491012 eV Total energy + Delta-G solvation = -2488.332222 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.07605 -38.96034 -37.74651 -34.89258 -31.75352 -29.82790 -28.58407 -26.47417 -24.04284 -23.59444 -23.40422 -20.28921 -19.08833 -17.88773 -17.64995 -16.81576 -16.64433 -16.14207 -16.00722 -15.79397 -14.90159 -14.55072 -14.03984 -13.74637 -13.34586 -13.29118 -13.02637 -12.73517 -12.58982 -12.40650 -11.92860 -11.81604 -11.43847 -11.39215 -11.20534 -11.15480 -10.93789 -10.47974 -10.38272 -8.38565 -6.47161 1.32571 1.36478 1.47365 2.28979 2.72576 2.93787 3.06414 3.69289 3.77321 3.87997 3.98330 4.16984 4.25437 4.42233 4.47115 4.49634 4.57625 4.61320 4.67127 4.79647 4.83975 4.86380 4.95757 4.99156 5.08369 5.13084 5.34780 5.41553 5.58515 5.91673 6.34911 6.56729 6.74237 7.17465 8.78935 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040956 B = 0.005441 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.493194 B = 5144.562167 C = 5636.010578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.959 3.041 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.243 1.243 7 C -0.549 4.549 8 H 0.026 0.974 9 C 0.178 3.822 10 O -0.407 6.407 11 C 0.047 3.953 12 C 0.069 3.931 13 O -0.411 6.411 14 C 0.066 3.934 15 C -0.117 4.117 16 C -0.150 4.150 17 C -0.135 4.135 18 C -0.117 4.117 19 H 0.274 0.726 20 H 0.018 0.982 21 H 0.009 0.991 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.242 -12.404 -3.436 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.166 1.166 7 C -0.587 4.587 8 H 0.044 0.956 9 C 0.103 3.897 10 O -0.327 6.327 11 C -0.030 4.030 12 C -0.007 4.007 13 O -0.331 6.331 14 C -0.010 4.010 15 C -0.136 4.136 16 C -0.187 4.187 17 C -0.172 4.172 18 C -0.154 4.154 19 H 0.083 0.917 20 H 0.035 0.965 21 H 0.027 0.973 22 H 0.097 0.903 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.863 -12.368 -3.575 20.430 hybrid contribution -0.194 0.830 0.227 0.882 sum 15.670 -11.538 -3.348 19.745 Atomic orbital electron populations 1.70038 1.08339 1.28875 1.50973 1.25888 0.95852 1.03539 0.93263 0.85556 0.79486 0.77147 0.79813 1.18474 1.19553 1.16631 1.21174 0.91068 0.93811 1.52644 0.95602 1.20340 0.93307 0.80969 0.95133 1.87929 1.21160 1.28308 1.95269 1.22775 0.82289 0.96625 1.01294 1.22617 0.99528 0.91724 0.86881 1.87989 1.81962 1.24336 1.38797 1.22698 0.99678 0.81117 0.97506 1.22615 0.96857 0.97281 0.96830 1.23053 0.96417 0.98630 1.00627 1.22832 0.96810 0.98070 0.99517 1.22848 0.97512 0.93158 1.01868 0.91716 0.96464 0.97346 0.90258 0.92999 0.93014 0.88463 0.91313 0.93309 0.89544 0.90611 0.93453 0.89707 0.90262 0.89770 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.77 13.96 21.45 0.30 -60.47 16 2 C 0.01 0.75 5.47 84.65 0.46 1.22 16 3 Si 0.96 44.21 27.47 68.60 1.88 46.10 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 7 C -0.55 -34.93 9.99 25.60 0.26 -34.67 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.18 9.37 4.76 71.23 0.34 9.71 16 10 O -0.41 -20.34 10.29 -144.35 -1.49 -21.82 16 11 C 0.05 1.66 6.32 71.98 0.45 2.11 16 12 C 0.07 2.02 6.32 71.98 0.45 2.48 16 13 O -0.41 -14.02 10.31 -144.35 -1.49 -15.50 16 14 C 0.07 1.64 5.76 71.98 0.41 2.06 16 15 C -0.12 -2.75 4.00 -10.27 -0.04 -2.80 16 16 C -0.15 -3.78 7.65 31.18 0.24 -3.55 16 17 C -0.13 -2.44 8.09 31.18 0.25 -2.19 16 18 C -0.12 -1.90 7.65 31.12 0.24 -1.66 16 19 H 0.27 16.09 8.31 -92.70 -0.77 15.32 16 20 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 21 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 22 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.18 7.87 -2.39 -0.02 1.16 16 28 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.08 1.95 7.92 -2.39 -0.02 1.93 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.30 8.10 -2.38 -0.02 1.28 16 Total: -1.00 -74.72 285.22 3.26 -71.46 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.98 Total: 7.53 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 3.07 Total: -27.29 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.30 Total: -60.47 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -2.97 Total: -37.32 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.10 kcal Total: -74.72 3.26 -71.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400760668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.204 kcal (2) G-P(sol) polarization free energy of solvation -74.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds