Wall clock time and date at job start Mon Mar 30 2020 20:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47013 * 2 1 4 4 C 1.34177 * 125.00156 * 274.98425 * 3 2 1 5 5 C 1.46660 * 106.89522 * 180.02562 * 4 3 2 6 6 C 1.39023 * 133.88259 * 179.97438 * 5 4 3 7 7 C 1.40386 * 119.29903 * 179.73193 * 6 5 4 8 8 C 1.41313 * 120.08310 * 180.26457 * 7 6 5 9 9 H 1.08002 * 120.00389 * 330.37405 * 8 7 6 10 10 C 1.39875 * 119.99757 * 150.37284 * 8 7 6 11 11 N 1.30892 * 120.00123 * 161.72579 * 10 8 7 12 12 Si 1.86802 * 119.99802 * 341.72898 * 10 8 7 13 13 H 1.48503 * 109.46973 * 95.41889 * 12 10 8 14 14 H 1.48504 * 109.46872 * 215.41638 * 12 10 8 15 15 H 1.48494 * 109.47309 * 335.41679 * 12 10 8 16 16 C 1.41144 * 119.82902 * 0.54622 * 7 6 5 17 17 C 1.36001 * 120.57985 * 359.46773 * 16 7 6 18 18 C 1.39700 * 120.38457 * 0.25428 * 17 16 7 19 19 N 1.36880 * 125.00037 * 95.02317 * 3 2 1 20 20 H 0.97005 * 124.99205 * 359.97438 * 19 3 2 21 21 H 1.09006 * 109.47168 * 59.99894 * 1 2 3 22 22 H 1.08997 * 109.47125 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47101 * 299.99705 * 1 2 3 24 24 H 1.08996 * 109.47422 * 240.00429 * 2 1 3 25 25 H 1.08999 * 109.47542 * 120.00055 * 2 1 3 26 26 H 1.07990 * 126.55046 * 0.02562 * 4 3 2 27 27 H 1.08000 * 120.35566 * 0.05060 * 6 5 4 28 28 H 0.96996 * 120.00061 * 180.02562 * 11 10 8 29 29 H 1.07998 * 119.70913 * 179.74708 * 16 7 6 30 30 H 1.07998 * 119.80644 * 180.23614 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1988 2.1783 -1.0949 5 6 2.7013 3.4792 -0.6409 6 6 3.0577 4.6550 -1.2914 7 6 3.5086 5.7487 -0.5356 8 6 3.8698 6.9538 -1.1793 9 1 4.2613 6.9323 -2.1856 10 6 3.7202 8.1746 -0.5131 11 7 4.3642 9.2333 -0.9344 12 14 2.6015 8.2938 0.9782 13 1 3.4068 8.1320 2.2153 14 1 1.9344 9.6205 0.9917 15 1 1.5739 7.2237 0.9129 16 6 3.6060 5.6396 0.8682 17 6 3.2563 4.4863 1.4985 18 6 2.7999 3.3897 0.7632 19 7 2.3865 2.1283 1.1169 20 1 2.3508 1.7889 2.0250 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 2.0006 1.8859 -2.1154 27 1 2.9834 4.7281 -2.3664 28 1 4.2608 10.0798 -0.4722 29 1 3.9571 6.4809 1.4474 30 1 3.3321 4.4178 2.5736 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261078934.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:52 Heat of formation + Delta-G solvation = 35.522252 kcal Electronic energy + Delta-G solvation = -13528.566644 eV Core-core repulsion = 11288.239763 eV Total energy + Delta-G solvation = -2240.326881 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22335 -36.43163 -33.58636 -32.62631 -30.82021 -29.28191 -27.45762 -24.91221 -23.25274 -20.72438 -20.50916 -19.33780 -17.26899 -16.70109 -15.23810 -15.05315 -14.20182 -13.77699 -13.49404 -13.19930 -12.79284 -12.70760 -12.29687 -12.16604 -11.96309 -11.40295 -11.28182 -11.03573 -10.64609 -10.29471 -10.11404 -9.87141 -9.43001 -9.01548 -8.66244 -7.11475 -6.81599 -6.77304 -4.25352 2.18491 2.79100 3.15609 3.23665 3.38149 3.56158 3.89810 4.06748 4.61654 4.99420 5.10924 5.37797 5.51870 5.66462 5.79444 5.83266 5.93536 6.05405 6.20631 6.25438 6.51065 6.56609 6.79694 7.04278 7.14002 7.30479 7.42442 7.76871 7.85306 7.98183 8.23984 8.41888 8.48246 8.79139 8.95363 10.24271 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.056724 B = 0.007659 C = 0.007263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.503027 B = 3654.720951 C = 3854.254217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C 0.065 3.935 4 C -0.223 4.223 5 C -0.056 4.056 6 C -0.194 4.194 7 C 0.077 3.923 8 C -0.454 4.454 9 H 0.089 0.911 10 C 0.084 3.916 11 N -0.820 5.820 12 Si 0.904 3.096 13 H -0.272 1.272 14 H -0.291 1.291 15 H -0.246 1.246 16 C -0.180 4.180 17 C -0.102 4.102 18 C 0.000 4.000 19 N -0.599 5.599 20 H 0.398 0.602 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.130 0.870 27 H 0.101 0.899 28 H 0.282 0.718 29 H 0.106 0.894 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 -12.207 4.371 14.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 C -0.044 4.044 4 C -0.251 4.251 5 C -0.060 4.060 6 C -0.215 4.215 7 C 0.074 3.926 8 C -0.484 4.484 9 H 0.107 0.893 10 C -0.133 4.133 11 N -0.446 5.446 12 Si 0.731 3.269 13 H -0.199 1.199 14 H -0.218 1.218 15 H -0.169 1.169 16 C -0.200 4.200 17 C -0.123 4.123 18 C -0.102 4.102 19 N -0.203 5.203 20 H 0.233 0.767 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.148 0.852 27 H 0.119 0.881 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.340 -11.946 4.445 13.820 hybrid contribution -0.375 0.169 1.144 1.216 sum -5.715 -11.778 5.589 14.234 Atomic orbital electron populations 1.21758 0.94832 1.01210 1.02563 1.20113 0.95902 0.90834 1.02691 1.19955 1.03688 0.93965 0.86758 1.21293 1.13036 0.93995 0.96739 1.18996 1.01421 0.93799 0.91791 1.20353 1.10010 0.93070 0.98106 1.17550 0.90605 0.93743 0.90740 1.19311 1.37428 0.89008 1.02607 0.89325 1.26048 0.94205 0.95402 0.97621 1.69729 1.33764 1.01799 1.39273 0.86461 0.81851 0.77723 0.80875 1.19875 1.21812 1.16896 1.20719 1.07076 0.96583 0.95606 1.19344 1.03725 0.92216 0.96998 1.17902 1.11254 0.86653 0.94424 1.41288 1.60414 1.11539 1.07090 0.76735 0.92023 0.92629 0.92909 0.90008 0.91764 0.85242 0.88066 0.90814 0.87609 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 37.16 0.37 -1.17 16 2 C -0.06 -0.66 6.44 -27.88 -0.18 -0.84 16 3 C 0.07 1.07 6.33 -81.77 -0.52 0.56 16 4 C -0.22 -4.30 10.96 -37.61 -0.41 -4.71 16 5 C -0.06 -1.30 6.36 -105.14 -0.67 -1.97 16 6 C -0.19 -4.87 9.86 -38.48 -0.38 -5.25 16 7 C 0.08 2.03 5.10 -106.82 -0.54 1.48 16 8 C -0.45 -12.72 9.55 -37.80 -0.36 -13.08 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 10 C 0.08 2.27 5.40 -17.34 -0.09 2.18 16 11 N -0.82 -22.57 13.93 55.54 0.77 -21.80 16 12 Si 0.90 21.23 24.51 -169.99 -4.17 17.07 16 13 H -0.27 -6.14 6.70 56.52 0.38 -5.76 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.25 -5.94 6.87 56.52 0.39 -5.56 16 16 C -0.18 -4.45 7.08 -39.28 -0.28 -4.72 16 17 C -0.10 -2.27 9.99 -39.84 -0.40 -2.67 16 18 C 0.00 0.01 7.28 -83.78 -0.61 -0.60 16 19 N -0.60 -10.47 6.05 -6.80 -0.04 -10.51 16 20 H 0.40 5.58 8.96 -40.82 -0.37 5.21 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 27 H 0.10 2.43 8.06 -52.49 -0.42 2.01 16 28 H 0.28 7.03 8.30 -40.82 -0.34 6.70 16 29 H 0.11 2.57 4.71 -52.49 -0.25 2.32 16 30 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 254.32 15.07 3.83 3.83 Total: -1.00 -29.77 254.32 -7.26 -37.03 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.59 Total: 5.18 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: -4.08 Total: -30.80 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.73 Total: -32.31 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.17 Total: 17.07 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.77 -7.26 -37.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078934.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.554 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds