Wall clock time and date at job start Mon Mar 30 2020 20:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 110.30118 * 2 1 4 4 S 1.83387 * 110.43053 * 122.22452 * 2 1 3 5 5 C 1.83991 * 95.85280 * 138.67347 * 4 2 1 6 6 C 1.55157 * 100.90295 * 324.65000 * 5 4 2 7 7 C 1.52938 * 108.96298 * 41.44028 * 6 5 4 8 8 C 1.50698 * 108.77528 * 90.61661 * 7 6 5 9 9 H 1.08004 * 119.99910 * 199.47293 * 8 7 6 10 10 C 1.37882 * 120.00150 * 19.47622 * 8 7 6 11 11 N 1.31514 * 119.99718 * 216.55896 * 10 8 7 12 12 Si 1.86797 * 119.99775 * 36.55775 * 10 8 7 13 13 H 1.48495 * 109.47298 * 90.42049 * 12 10 8 14 14 H 1.48505 * 109.46565 * 210.41743 * 12 10 8 15 15 H 1.48494 * 109.47336 * 330.41577 * 12 10 8 16 16 N 1.46901 * 108.88686 * 209.10198 * 7 6 5 17 17 C 1.46896 * 111.00182 * 200.12766 * 16 7 6 18 18 C 1.46901 * 111.00056 * 324.08619 * 16 7 6 19 19 H 1.09006 * 109.46585 * 198.96507 * 1 2 3 20 20 H 1.08997 * 109.46865 * 318.96341 * 1 2 3 21 21 H 1.09002 * 109.47186 * 78.96926 * 1 2 3 22 22 H 1.08994 * 111.13281 * 82.55519 * 5 4 2 23 23 H 1.09003 * 111.13267 * 206.74303 * 5 4 2 24 24 H 1.09002 * 109.60576 * 281.50135 * 6 5 4 25 25 H 1.09005 * 109.60376 * 161.37081 * 6 5 4 26 26 H 0.97001 * 119.99644 * 180.02562 * 11 10 8 27 27 H 1.09001 * 109.47017 * 190.51745 * 17 16 7 28 28 H 1.08995 * 109.47375 * 70.51898 * 17 16 7 29 29 H 1.09002 * 109.46767 * 310.51885 * 17 16 7 30 30 H 1.09001 * 109.46897 * 295.13050 * 18 16 7 31 31 H 1.09001 * 109.47458 * 55.13470 * 18 16 7 32 32 H 1.08998 * 109.47034 * 175.13762 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 16 2.1702 -0.9164 1.4538 5 6 3.5237 -1.7768 0.5522 6 6 2.8518 -2.0177 -0.8255 7 6 2.0644 -0.7673 -1.2198 8 6 2.9659 0.1436 -2.0127 9 1 2.7204 1.1903 -2.1157 10 6 4.1041 -0.3593 -2.6067 11 7 5.1971 0.3704 -2.6564 12 14 4.0935 -2.0770 -3.3407 13 1 3.6918 -2.0028 -4.7683 14 1 5.4525 -2.6670 -3.2388 15 1 3.1281 -2.9266 -2.5983 16 7 0.9308 -1.1660 -2.0648 17 6 0.4333 -0.0283 -2.8495 18 6 1.2950 -2.2893 -2.9387 19 1 -0.3633 -0.9720 0.3340 20 1 -0.3633 0.7751 0.6747 21 1 -0.3634 0.1966 -1.0087 22 1 4.4003 -1.1363 0.4551 23 1 3.7799 -2.7200 1.0348 24 1 2.1755 -2.8699 -0.7585 25 1 3.6169 -2.2197 -1.5752 26 1 5.9977 0.0168 -3.0746 27 1 -0.5122 -0.2974 -3.3204 28 1 1.1617 0.2291 -3.6184 29 1 0.2812 0.8277 -2.1920 30 1 2.0648 -1.9686 -3.6407 31 1 1.6753 -3.1122 -2.3334 32 1 0.4153 -2.6204 -3.4905 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261117013.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:15 Heat of formation + Delta-G solvation = 87.646517 kcal Electronic energy + Delta-G solvation = -14093.248747 eV Core-core repulsion = 11990.626095 eV Total energy + Delta-G solvation = -2102.622652 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.81070 -33.12172 -32.17224 -31.54888 -27.06393 -27.00610 -24.12409 -22.77137 -22.00856 -18.55193 -16.42400 -16.32394 -15.47839 -14.98745 -14.19550 -13.88017 -13.26647 -13.19647 -12.69610 -12.40623 -12.09907 -11.64675 -11.42590 -11.27854 -11.00003 -10.64269 -10.29711 -10.20085 -10.13502 -9.96239 -9.47072 -9.02704 -8.63881 -8.19598 -7.16244 -6.91372 -6.47227 -4.24992 2.73927 3.05393 3.15278 3.20472 3.30974 4.16980 4.67753 5.10849 5.55138 5.68658 5.88599 5.91183 5.99229 6.11260 6.14342 6.17912 6.32549 6.39084 6.46993 6.49381 6.53739 6.66348 6.76789 6.81631 6.99332 7.12569 7.45884 7.89893 8.12402 8.32600 8.72996 9.28936 10.63049 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.029229 B = 0.018207 C = 0.014944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.738639 B = 1537.529925 C = 1873.169329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.006 3.994 3 H 0.089 0.911 4 S -0.346 6.346 5 C -0.050 4.050 6 C -0.127 4.127 7 C 0.210 3.790 8 C -0.569 4.569 9 H 0.074 0.926 10 C 0.098 3.902 11 N -0.844 5.844 12 Si 0.809 3.191 13 H -0.291 1.291 14 H -0.300 1.300 15 H -0.199 1.199 16 N -0.539 5.539 17 C 0.035 3.965 18 C 0.016 3.984 19 H 0.059 0.941 20 H 0.032 0.968 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.266 0.734 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.019 0.981 31 H 0.075 0.925 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 -4.313 1.556 7.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 H 0.108 0.892 4 S -0.120 6.120 5 C -0.198 4.198 6 C -0.165 4.165 7 C 0.121 3.879 8 C -0.607 4.607 9 H 0.092 0.908 10 C -0.111 4.111 11 N -0.476 5.476 12 Si 0.640 3.360 13 H -0.220 1.220 14 H -0.228 1.228 15 H -0.124 1.124 16 N -0.263 5.263 17 C -0.113 4.113 18 C -0.131 4.131 19 H 0.078 0.922 20 H 0.051 0.949 21 H 0.110 0.890 22 H 0.110 0.890 23 H 0.106 0.894 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.037 0.963 31 H 0.094 0.906 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.414 -4.436 3.020 8.363 hybrid contribution 1.436 -0.388 -2.331 2.765 sum -4.978 -4.824 0.688 6.966 Atomic orbital electron populations 1.22056 0.93285 1.00999 1.03038 1.23706 0.97680 0.99973 0.91001 0.89247 1.87147 1.41243 1.60359 1.23255 1.24122 0.98113 1.00988 0.96581 1.23354 0.99081 0.98816 0.95292 1.19345 0.86829 0.91054 0.90653 1.21123 1.07098 0.96654 1.35804 0.90786 1.25065 0.94077 0.96973 0.94964 1.70293 1.00102 1.39500 1.37738 0.89271 0.77865 0.88884 0.79993 1.22002 1.22847 1.12399 1.62792 1.35138 1.07306 1.21030 1.22213 0.97587 0.94078 0.97431 1.23073 0.98765 0.95329 0.95965 0.92187 0.94885 0.88984 0.89019 0.89441 0.91467 0.90416 0.92396 0.94037 0.94331 0.91462 0.96269 0.90643 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.53 37.16 0.32 -2.13 16 2 C 0.01 0.12 3.24 -26.37 -0.09 0.03 16 3 H 0.09 2.02 7.58 -51.93 -0.39 1.63 16 4 S -0.35 -7.07 22.58 -107.50 -2.43 -9.50 16 5 C -0.05 -1.00 7.52 38.30 0.29 -0.71 16 6 C -0.13 -2.69 3.21 -25.62 -0.08 -2.77 16 7 C 0.21 4.60 0.59 -132.42 -0.08 4.52 16 8 C -0.57 -14.61 6.24 -34.44 -0.21 -14.83 16 9 H 0.07 2.09 7.91 -52.48 -0.41 1.68 16 10 C 0.10 2.59 4.99 -17.82 -0.09 2.50 16 11 N -0.84 -24.00 13.96 55.43 0.77 -23.22 16 12 Si 0.81 18.75 21.73 -169.99 -3.69 15.06 16 13 H -0.29 -6.99 7.08 56.52 0.40 -6.59 16 14 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.20 -4.07 2.51 56.52 0.14 -3.92 16 16 N -0.54 -10.81 3.63 -236.37 -0.86 -11.67 16 17 C 0.03 0.66 7.30 60.06 0.44 1.10 16 18 C 0.02 0.32 7.44 60.07 0.45 0.76 16 19 H 0.06 1.09 8.00 -51.93 -0.42 0.68 16 20 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.09 1.62 3.74 -51.93 -0.19 1.42 16 22 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 23 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 24 H 0.07 1.34 6.41 -51.93 -0.33 1.01 16 25 H 0.08 1.72 1.53 -51.93 -0.08 1.64 16 26 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.81 7.18 -51.93 -0.37 0.44 16 29 H 0.07 1.24 5.77 -51.93 -0.30 0.94 16 30 H 0.02 0.41 3.35 -51.93 -0.17 0.24 16 31 H 0.08 1.41 4.36 -51.93 -0.23 1.19 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 232.48 15.07 3.50 3.50 Total: -1.00 -27.37 232.48 -6.17 -33.54 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.41 Total: 3.81 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 0.94 Total: -11.52 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.08 Total: -34.89 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -3.69 Total: 15.06 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -2.43 Total: -9.50 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.37 -6.17 -33.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261117013.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.187 kcal (2) G-P(sol) polarization free energy of solvation -27.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds