Wall clock time and date at job start Mon Mar 30 2020 20:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 110.30118 * 2 1 4 4 S 1.83387 * 110.43053 * 122.22452 * 2 1 3 5 5 C 1.83991 * 95.85280 * 138.67347 * 4 2 1 6 6 C 1.55157 * 100.90295 * 324.65000 * 5 4 2 7 7 C 1.52938 * 108.96298 * 41.44028 * 6 5 4 8 8 C 1.50698 * 108.77528 * 90.61661 * 7 6 5 9 9 H 1.08004 * 119.99910 * 199.47293 * 8 7 6 10 10 C 1.37882 * 120.00150 * 19.47622 * 8 7 6 11 11 N 1.31514 * 119.99718 * 216.55896 * 10 8 7 12 12 Si 1.86797 * 119.99775 * 36.55775 * 10 8 7 13 13 H 1.48495 * 109.47298 * 90.42049 * 12 10 8 14 14 H 1.48505 * 109.46565 * 210.41743 * 12 10 8 15 15 H 1.48494 * 109.47336 * 330.41577 * 12 10 8 16 16 N 1.46901 * 108.88686 * 209.10198 * 7 6 5 17 17 C 1.46896 * 111.00182 * 200.12766 * 16 7 6 18 18 C 1.46901 * 111.00056 * 324.08619 * 16 7 6 19 19 H 1.09006 * 109.46585 * 198.96507 * 1 2 3 20 20 H 1.08997 * 109.46865 * 318.96341 * 1 2 3 21 21 H 1.09002 * 109.47186 * 78.96926 * 1 2 3 22 22 H 1.08994 * 111.13281 * 82.55519 * 5 4 2 23 23 H 1.09003 * 111.13267 * 206.74303 * 5 4 2 24 24 H 1.09002 * 109.60576 * 281.50135 * 6 5 4 25 25 H 1.09005 * 109.60376 * 161.37081 * 6 5 4 26 26 H 0.97001 * 119.99644 * 180.02562 * 11 10 8 27 27 H 1.09001 * 109.47017 * 190.51745 * 17 16 7 28 28 H 1.08995 * 109.47375 * 70.51898 * 17 16 7 29 29 H 1.09002 * 109.46767 * 310.51885 * 17 16 7 30 30 H 1.09001 * 109.46897 * 295.13050 * 18 16 7 31 31 H 1.09001 * 109.47458 * 55.13470 * 18 16 7 32 32 H 1.08998 * 109.47034 * 175.13762 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 16 2.1702 -0.9164 1.4538 5 6 3.5237 -1.7768 0.5522 6 6 2.8518 -2.0177 -0.8255 7 6 2.0644 -0.7673 -1.2198 8 6 2.9659 0.1436 -2.0127 9 1 2.7204 1.1903 -2.1157 10 6 4.1041 -0.3593 -2.6067 11 7 5.1971 0.3704 -2.6564 12 14 4.0935 -2.0770 -3.3407 13 1 3.6918 -2.0028 -4.7683 14 1 5.4525 -2.6670 -3.2388 15 1 3.1281 -2.9266 -2.5983 16 7 0.9308 -1.1660 -2.0648 17 6 0.4333 -0.0283 -2.8495 18 6 1.2950 -2.2893 -2.9387 19 1 -0.3633 -0.9720 0.3340 20 1 -0.3633 0.7751 0.6747 21 1 -0.3634 0.1966 -1.0087 22 1 4.4003 -1.1363 0.4551 23 1 3.7799 -2.7200 1.0348 24 1 2.1755 -2.8699 -0.7585 25 1 3.6169 -2.2197 -1.5752 26 1 5.9977 0.0168 -3.0746 27 1 -0.5122 -0.2974 -3.3204 28 1 1.1617 0.2291 -3.6184 29 1 0.2812 0.8277 -2.1920 30 1 2.0648 -1.9686 -3.6407 31 1 1.6753 -3.1122 -2.3334 32 1 0.4153 -2.6204 -3.4905 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261117013.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:15 Heat of formation + Delta-G solvation = 68.849883 kcal Electronic energy + Delta-G solvation = -14094.063830 eV Core-core repulsion = 11990.626095 eV Total energy + Delta-G solvation = -2103.437735 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.49653 -34.91720 -33.96468 -33.17823 -28.84332 -28.58843 -25.90749 -24.41530 -23.61530 -20.35558 -18.28576 -18.03442 -17.20103 -16.65157 -15.84526 -15.49653 -15.04627 -14.81953 -14.55779 -14.13487 -13.73358 -13.21180 -13.05501 -12.87282 -12.67302 -12.32370 -11.98052 -11.90669 -11.83714 -11.57838 -11.21947 -10.72118 -10.61939 -9.89712 -8.87461 -8.55640 -8.51659 -6.31738 1.11092 1.19977 1.33202 1.39561 1.53329 2.21790 2.73876 3.42796 3.88244 4.09758 4.23052 4.37012 4.40193 4.56544 4.59114 4.66138 4.72607 4.80949 4.94537 4.96550 5.00938 5.07210 5.18387 5.24200 5.39714 5.52527 5.65698 6.04121 6.42563 6.53497 6.63754 7.23526 8.61558 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.029229 B = 0.018207 C = 0.014944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.738639 B = 1537.529925 C = 1873.169329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.000 4.000 3 H 0.059 0.941 4 S -0.337 6.337 5 C -0.050 4.050 6 C -0.131 4.131 7 C 0.210 3.790 8 C -0.565 4.565 9 H 0.030 0.970 10 C 0.047 3.953 11 N -0.899 5.899 12 Si 0.857 3.143 13 H -0.305 1.305 14 H -0.313 1.313 15 H -0.139 1.139 16 N -0.530 5.530 17 C 0.038 3.962 18 C 0.008 3.992 19 H 0.065 0.935 20 H 0.045 0.955 21 H 0.098 0.902 22 H 0.066 0.934 23 H 0.123 0.877 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.265 0.735 27 H 0.077 0.923 28 H 0.008 0.992 29 H 0.065 0.935 30 H -0.002 1.002 31 H 0.088 0.912 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 -6.785 2.117 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.130 4.130 3 H 0.077 0.923 4 S -0.111 6.111 5 C -0.198 4.198 6 C -0.169 4.169 7 C 0.121 3.879 8 C -0.603 4.603 9 H 0.048 0.952 10 C -0.157 4.157 11 N -0.533 5.533 12 Si 0.688 3.312 13 H -0.234 1.234 14 H -0.242 1.242 15 H -0.063 1.063 16 N -0.253 5.253 17 C -0.110 4.110 18 C -0.139 4.139 19 H 0.084 0.916 20 H 0.064 0.936 21 H 0.116 0.884 22 H 0.085 0.915 23 H 0.141 0.859 24 H 0.111 0.889 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.027 0.973 29 H 0.083 0.917 30 H 0.016 0.984 31 H 0.106 0.894 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.500 -6.916 3.589 11.531 hybrid contribution 2.053 0.536 -2.483 3.266 sum -6.447 -6.381 1.106 9.138 Atomic orbital electron populations 1.21976 0.90714 1.01798 1.03823 1.23628 0.99780 0.98388 0.91183 0.92299 1.87093 1.41011 1.60070 1.22876 1.24162 0.97020 1.02166 0.96489 1.23363 0.99037 0.99055 0.95447 1.19307 0.86972 0.90923 0.90714 1.21282 1.07637 0.95370 1.36012 0.95211 1.25847 0.93573 1.01079 0.95192 1.70393 1.00980 1.42081 1.39891 0.88612 0.78447 0.85378 0.78756 1.23439 1.24231 1.06284 1.62791 1.33430 1.07771 1.21303 1.22246 0.98276 0.93949 0.96537 1.23203 0.99960 0.94966 0.95775 0.91556 0.93602 0.88403 0.91472 0.85870 0.88882 0.91526 0.92595 0.90460 0.97332 0.91686 0.98362 0.89444 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 8.53 71.98 0.61 -3.58 16 2 C 0.00 -0.01 3.24 30.83 0.10 0.09 16 3 H 0.06 2.72 7.58 -2.38 -0.02 2.70 16 4 S -0.34 -13.01 22.58 -56.49 -1.28 -14.29 16 5 C -0.05 -1.90 7.52 72.72 0.55 -1.35 16 6 C -0.13 -5.14 3.21 31.31 0.10 -5.04 16 7 C 0.21 8.92 0.59 2.99 0.00 8.92 16 8 C -0.56 -29.68 6.24 25.60 0.16 -29.52 16 9 H 0.03 1.78 7.91 -2.91 -0.02 1.76 16 10 C 0.05 2.55 4.99 84.66 0.42 2.97 16 11 N -0.90 -53.40 13.96 21.45 0.30 -53.10 16 12 Si 0.86 38.46 21.73 68.60 1.49 39.95 16 13 H -0.30 -14.24 7.08 99.48 0.70 -13.54 16 14 H -0.31 -14.59 7.11 99.48 0.71 -13.89 16 15 H -0.14 -5.09 2.51 99.48 0.25 -4.84 16 16 N -0.53 -19.64 3.63 -901.74 -3.27 -22.91 16 17 C 0.04 1.36 7.30 127.69 0.93 2.29 16 18 C 0.01 0.29 7.44 127.69 0.95 1.24 16 19 H 0.07 2.16 8.00 -2.38 -0.02 2.14 16 20 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.10 3.16 3.74 -2.39 -0.01 3.16 16 22 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 23 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 24 H 0.09 3.21 6.41 -2.39 -0.02 3.20 16 25 H 0.07 2.77 1.53 -2.38 0.00 2.77 16 26 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 27 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 28 H 0.01 0.34 7.18 -2.39 -0.02 0.32 16 29 H 0.06 2.34 5.77 -2.39 -0.01 2.33 16 30 H 0.00 -0.06 3.35 -2.39 -0.01 -0.07 16 31 H 0.09 2.77 4.36 -2.39 -0.01 2.75 16 32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -60.56 232.48 1.73 -58.83 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.66 Total: 15.51 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 3.83 Total: -23.99 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -2.97 Total: -76.01 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.49 Total: 39.95 kcal Atomic # 16 Polarization: -13.01 SS G_CDS: -1.28 Total: -14.29 kcal Total: -60.56 1.73 -58.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261117013.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.677 kcal (2) G-P(sol) polarization free energy of solvation -60.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds