Wall clock time and date at job start Mon Mar 30 2020 20:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34307 * 125.02979 * 2 1 4 4 C 1.46671 * 107.05024 * 180.21844 * 3 2 1 5 5 C 1.40726 * 106.07097 * 359.77169 * 4 3 2 6 6 C 1.38924 * 119.45231 * 180.02562 * 5 4 3 7 7 C 1.37940 * 119.92418 * 359.95053 * 6 5 4 8 8 C 1.38702 * 120.64379 * 0.07129 * 7 6 5 9 9 C 1.37823 * 120.37002 * 359.94127 * 8 7 6 10 10 C 1.50698 * 120.17537 * 179.97438 * 9 8 7 11 11 N 1.37001 * 125.03331 * 179.81823 * 2 1 3 12 12 C 1.37209 * 125.08456 * 0.03543 * 11 2 1 13 13 H 1.07995 * 119.99924 * 39.96924 * 12 11 2 14 14 C 1.38853 * 119.99748 * 219.95959 * 12 11 2 15 15 N 1.31437 * 120.00040 * 203.74489 * 14 12 11 16 16 Si 1.86802 * 120.00276 * 23.74364 * 14 12 11 17 17 H 1.48502 * 109.47068 * 265.09587 * 16 14 12 18 18 H 1.48499 * 109.46923 * 25.09373 * 16 14 12 19 19 H 1.48490 * 109.47163 * 145.09248 * 16 14 12 20 20 H 1.08994 * 109.47006 * 264.95595 * 1 2 3 21 21 H 1.09004 * 109.46975 * 24.95224 * 1 2 3 22 22 H 1.09000 * 109.46759 * 144.95485 * 1 2 3 23 23 H 1.08001 * 126.47152 * 359.97017 * 3 2 1 24 24 H 1.07999 * 120.03648 * 179.97438 * 6 5 4 25 25 H 1.07991 * 119.67658 * 180.02562 * 7 6 5 26 26 H 1.07999 * 119.81581 * 179.97438 * 8 7 6 27 27 H 1.08995 * 109.47231 * 270.02595 * 10 9 8 28 28 H 1.09000 * 109.46985 * 30.03139 * 10 9 8 29 29 H 1.09005 * 109.46543 * 150.02366 * 10 9 8 30 30 H 0.97001 * 120.00528 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2780 1.0998 0.0000 4 6 3.6730 0.6470 -0.0053 5 6 3.6262 -0.7594 -0.0029 6 6 4.8125 -1.4824 -0.0064 7 6 6.0222 -0.8197 -0.0132 8 6 6.0689 0.5665 -0.0152 9 6 4.9039 1.3030 -0.0115 10 6 4.9597 2.8089 -0.0131 11 7 2.2935 -1.1218 0.0036 12 6 1.8269 -2.4121 0.0070 13 1 0.9695 -2.6778 -0.5935 14 6 2.4572 -3.3762 0.7823 15 7 2.3503 -4.6473 0.4655 16 14 3.4571 -2.8668 2.2757 17 1 4.8872 -2.7435 1.8952 18 1 2.9642 -1.5594 2.7788 19 1 3.3146 -3.8923 3.3401 20 1 -0.3633 -0.0903 1.0236 21 1 -0.3633 0.9318 -0.4336 22 1 -0.3633 -0.8414 -0.5901 23 1 1.9353 2.1240 -0.0005 24 1 4.7875 -2.5621 -0.0041 25 1 6.9419 -1.3857 -0.0163 26 1 7.0234 1.0717 -0.0201 27 1 4.9774 3.1729 1.0141 28 1 5.8604 3.1385 -0.5311 29 1 4.0816 3.2044 -0.5238 30 1 2.7909 -5.3209 1.0069 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261210644.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:07 Heat of formation + Delta-G solvation = 34.018986 kcal Electronic energy + Delta-G solvation = -14184.978064 eV Core-core repulsion = 11944.585997 eV Total energy + Delta-G solvation = -2240.392067 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.10611 -38.16471 -35.41079 -33.73619 -31.92857 -31.63132 -28.19746 -26.73878 -26.32587 -22.78941 -21.80769 -20.66067 -19.41143 -17.39490 -17.12262 -16.26973 -15.92560 -15.70072 -14.95643 -14.53146 -14.47935 -14.14907 -13.72121 -13.54277 -13.27907 -13.25259 -12.92155 -12.66168 -12.58508 -12.24459 -12.06262 -11.73590 -11.36207 -11.15654 -10.09751 -8.91526 -8.81949 -8.37486 -6.43442 0.34198 0.91388 1.12034 1.20456 1.31138 1.96247 2.04403 2.54795 2.82661 3.14891 3.99928 4.16121 4.23633 4.44197 4.54188 4.63375 4.68613 4.82785 4.86692 4.91214 4.97492 5.09578 5.10291 5.23288 5.31624 5.44706 5.53765 5.74267 5.82687 5.90702 6.17988 6.32562 6.49689 6.98197 7.39776 8.28724 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027368 B = 0.015355 C = 0.011066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.834851 B = 1823.108405 C = 2529.625898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.036 3.964 3 C -0.241 4.241 4 C -0.140 4.140 5 C 0.037 3.963 6 C -0.155 4.155 7 C -0.120 4.120 8 C -0.166 4.166 9 C -0.057 4.057 10 C -0.098 4.098 11 N -0.332 5.332 12 C -0.370 4.370 13 H 0.088 0.912 14 C 0.052 3.948 15 N -0.874 5.874 16 Si 0.915 3.085 17 H -0.234 1.234 18 H -0.282 1.282 19 H -0.275 1.275 20 H 0.072 0.928 21 H 0.103 0.897 22 H 0.054 0.946 23 H 0.164 0.836 24 H 0.093 0.907 25 H 0.138 0.862 26 H 0.150 0.850 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 11.171 1.004 11.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 C -0.265 4.265 4 C -0.145 4.145 5 C -0.073 4.073 6 C -0.175 4.175 7 C -0.140 4.140 8 C -0.185 4.185 9 C -0.057 4.057 10 C -0.155 4.155 11 N 0.000 5.000 12 C -0.497 4.497 13 H 0.106 0.894 14 C -0.156 4.156 15 N -0.506 5.506 16 Si 0.739 3.261 17 H -0.158 1.158 18 H -0.207 1.207 19 H -0.201 1.201 20 H 0.090 0.910 21 H 0.122 0.878 22 H 0.073 0.927 23 H 0.182 0.818 24 H 0.111 0.889 25 H 0.156 0.844 26 H 0.168 0.832 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.931 10.575 1.026 11.329 hybrid contribution 0.017 -0.919 0.575 1.084 sum 3.948 9.657 1.601 10.555 Atomic orbital electron populations 1.20322 0.86685 1.03401 1.02634 1.21222 0.95347 0.85938 1.05060 1.21433 0.89635 0.97689 1.17741 1.19351 0.94726 0.91355 1.09058 1.18812 0.85723 0.94983 1.07757 1.20207 0.91525 0.98433 1.07360 1.20940 0.95813 0.95452 1.01786 1.20939 0.98156 0.92964 1.06444 1.19718 0.90387 0.97342 0.98283 1.20685 1.03301 0.88804 1.02686 1.40305 1.02772 1.04838 1.52115 1.19005 1.18095 0.82828 1.29751 0.89446 1.25800 0.96453 0.94445 0.98911 1.69837 1.41449 1.01504 1.37812 0.86373 0.81880 0.77983 0.79873 1.15789 1.20709 1.20067 0.90960 0.87789 0.92736 0.81847 0.88868 0.84394 0.83207 0.90626 0.89809 0.91457 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.60 9.95 71.24 0.71 -1.89 16 2 C 0.04 1.63 6.79 40.85 0.28 1.90 16 3 C -0.24 -9.84 10.65 23.58 0.25 -9.59 16 4 C -0.14 -6.19 6.14 -20.17 -0.12 -6.31 16 5 C 0.04 1.86 5.21 38.93 0.20 2.06 16 6 C -0.15 -7.44 6.73 22.36 0.15 -7.29 16 7 C -0.12 -4.71 10.02 22.31 0.22 -4.49 16 8 C -0.17 -5.71 9.69 22.28 0.22 -5.49 16 9 C -0.06 -2.07 5.91 -19.66 -0.12 -2.18 16 10 C -0.10 -2.54 9.96 71.24 0.71 -1.83 16 11 N -0.33 -17.53 2.41 -329.68 -0.80 -18.32 16 12 C -0.37 -21.19 9.68 84.00 0.81 -20.37 16 13 H 0.09 5.25 7.67 -2.91 -0.02 5.23 16 14 C 0.05 2.95 4.75 84.90 0.40 3.36 16 15 N -0.87 -50.16 13.96 21.65 0.30 -49.86 16 16 Si 0.92 45.43 24.53 68.60 1.68 47.11 16 17 H -0.23 -11.06 5.50 99.48 0.55 -10.51 16 18 H -0.28 -14.86 7.11 99.48 0.71 -14.15 16 19 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 20 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 21 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 22 H 0.05 2.04 7.57 -2.39 -0.02 2.02 16 23 H 0.16 5.30 8.06 -2.91 -0.02 5.28 16 24 H 0.09 4.77 5.77 -2.91 -0.02 4.75 16 25 H 0.14 4.46 8.06 -2.92 -0.02 4.44 16 26 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 29 H 0.07 1.67 7.90 -2.38 -0.02 1.65 16 30 H 0.29 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -65.63 250.00 5.87 -59.76 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.97 Total: 13.44 kcal Atomic # 6 Polarization: -55.84 SS G_CDS: 3.72 Total: -52.12 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -0.49 Total: -68.18 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.68 Total: 47.11 kcal Total: -65.63 5.87 -59.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210644.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.774 kcal (2) G-P(sol) polarization free energy of solvation -65.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds