Wall clock time and date at job start Mon Mar 30 2020 20:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47425 * 2 1 4 4 C 1.39652 * 120.07473 * 270.25556 * 3 2 1 5 5 C 1.43201 * 120.15339 * 359.97438 * 4 3 2 6 6 N 3.56157 * 94.77375 * 284.41323 * 2 1 3 7 7 C 1.39615 * 119.69629 * 180.24998 * 4 3 2 8 8 C 1.37964 * 119.84815 * 359.74361 * 7 4 3 9 9 C 1.38349 * 120.15133 * 0.02562 * 8 7 4 10 10 C 1.37917 * 120.07731 * 89.99409 * 3 2 1 11 11 C 1.50700 * 119.92573 * 0.02562 * 10 3 2 12 12 C 1.50702 * 109.46869 * 84.72160 * 11 10 3 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 H 1.08994 * 109.47430 * 300.00375 * 1 2 3 21 21 H 1.09006 * 109.46733 * 60.00423 * 1 2 3 22 22 H 1.08999 * 109.46699 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47731 * 239.99795 * 2 1 3 24 24 H 1.09003 * 109.47218 * 119.99746 * 2 1 3 25 25 H 1.08003 * 120.07778 * 179.76547 * 7 4 3 26 26 H 1.08006 * 119.92646 * 179.97438 * 8 7 4 27 27 H 1.07998 * 119.84670 * 180.02562 * 9 8 7 28 28 H 1.09004 * 109.47210 * 324.72453 * 11 10 3 29 29 H 1.08994 * 109.47551 * 204.72105 * 11 10 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2606 2.0824 -1.2085 5 6 2.0189 1.4137 -2.4515 6 7 1.8264 0.8834 -3.4375 7 6 2.7311 3.3969 -1.1993 8 6 2.9623 4.0351 0.0018 9 6 2.7295 3.3753 1.1954 10 6 2.2627 2.0725 1.1935 11 6 2.0119 1.3620 2.4986 12 6 3.2247 0.5473 2.8681 13 1 4.0907 0.5447 2.2226 14 6 3.2313 -0.1897 4.0334 15 7 2.1770 -0.1862 4.8195 16 14 4.7374 -1.1935 4.4951 17 1 5.6570 -0.3598 5.3104 18 1 4.3185 -2.3816 5.2813 19 1 5.4343 -1.6370 3.2611 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.9133 3.9131 -2.1303 26 1 3.3266 5.0518 0.0104 27 1 2.9117 3.8797 2.1327 28 1 1.1498 0.7033 2.3939 29 1 1.8155 2.0960 3.2800 30 1 2.1814 -0.7050 5.6392 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306825297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:16 Heat of formation + Delta-G solvation = 15.011095 kcal Electronic energy + Delta-G solvation = -13586.738794 eV Core-core repulsion = 11345.522483 eV Total energy + Delta-G solvation = -2241.216311 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.74513 -37.53773 -35.66407 -34.76144 -33.01333 -30.68803 -28.87772 -25.46598 -25.10618 -23.55361 -21.25660 -19.03217 -18.40380 -17.00029 -16.73400 -16.47908 -15.33023 -14.97170 -14.57258 -14.45885 -14.24548 -14.03136 -13.97630 -13.59951 -13.14678 -12.94506 -12.86918 -12.56926 -12.51603 -12.36364 -11.92305 -11.70723 -11.46606 -11.18715 -10.53128 -9.64008 -9.37716 -8.14702 -6.24940 -0.06061 0.59004 1.42456 1.44239 1.53840 1.63871 2.03566 2.44205 2.94860 3.04014 3.17749 3.87374 4.02375 4.21292 4.35870 4.48589 4.58836 4.63903 4.66995 4.94209 5.00747 5.15309 5.22204 5.30813 5.42950 5.50906 5.52146 5.63307 5.82941 6.03248 6.07062 6.26634 6.47419 6.87916 7.42792 8.94285 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.008918 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.641996 B = 3139.002641 C = 3439.824216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 C -0.041 4.041 4 C -0.052 4.052 5 C 0.286 3.714 6 N -0.465 5.465 7 C -0.077 4.077 8 C -0.114 4.114 9 C -0.096 4.096 10 C -0.067 4.067 11 C 0.057 3.943 12 C -0.518 4.518 13 H 0.054 0.946 14 C 0.010 3.990 15 N -0.926 5.926 16 Si 0.952 3.048 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.268 1.268 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.158 0.842 26 H 0.166 0.834 27 H 0.130 0.870 28 H 0.018 0.982 29 H 0.007 0.993 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 7.059 -7.908 10.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 C -0.043 4.043 4 C -0.055 4.055 5 C -0.028 4.028 6 N -0.141 5.141 7 C -0.097 4.097 8 C -0.131 4.131 9 C -0.114 4.114 10 C -0.067 4.067 11 C 0.020 3.980 12 C -0.556 4.556 13 H 0.072 0.928 14 C -0.188 4.188 15 N -0.567 5.567 16 Si 0.777 3.223 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.193 1.193 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.176 0.824 26 H 0.184 0.816 27 H 0.148 0.852 28 H 0.036 0.964 29 H 0.025 0.975 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.277 6.157 -9.289 11.148 hybrid contribution 0.640 -0.663 1.134 1.461 sum 0.917 5.494 -8.155 9.876 Atomic orbital electron populations 1.21622 0.93807 1.02189 1.01520 1.20608 0.97075 0.92913 1.02557 1.19759 0.97423 0.95883 0.91247 1.16000 1.08934 0.95401 0.85188 1.25793 0.92226 0.92323 0.92422 1.81182 1.10930 1.09552 1.12466 1.21330 0.96773 0.91442 1.00135 1.21342 0.99954 1.01385 0.90466 1.21534 0.96540 0.93625 0.99732 1.20203 0.96787 0.94664 0.95041 1.18136 0.96427 0.94364 0.89073 1.21318 1.00825 1.27510 1.05940 0.92794 1.25750 0.98700 0.97889 0.96460 1.70057 1.30543 1.42511 1.13551 0.85639 0.79877 0.78349 0.78391 1.19858 1.21042 1.19282 0.92921 0.92655 0.91606 0.92075 0.90584 0.82422 0.81620 0.85221 0.96397 0.97462 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.77 71.98 0.70 -3.65 16 2 C -0.09 -3.44 4.97 29.85 0.15 -3.29 16 3 C -0.04 -1.45 5.17 -19.60 -0.10 -1.55 16 4 C -0.05 -1.56 5.73 -21.36 -0.12 -1.68 16 5 C 0.29 8.91 13.81 88.33 1.22 10.13 16 6 N -0.46 -15.65 18.54 19.00 0.35 -15.30 16 7 C -0.08 -1.81 9.76 22.54 0.22 -1.59 16 8 C -0.11 -2.66 10.03 22.23 0.22 -2.44 16 9 C -0.10 -3.01 9.67 22.33 0.22 -2.79 16 10 C -0.07 -2.59 5.06 -19.90 -0.10 -2.69 16 11 C 0.06 2.74 4.42 29.10 0.13 2.87 16 12 C -0.52 -27.31 8.29 25.60 0.21 -27.10 16 13 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 14 C 0.01 0.57 5.46 84.66 0.46 1.03 16 15 N -0.93 -53.11 13.29 21.45 0.28 -52.83 16 16 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H 0.05 1.81 7.30 -2.39 -0.02 1.79 16 21 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 22 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.06 2.12 7.10 -2.39 -0.02 2.10 16 24 H 0.08 3.25 6.14 -2.39 -0.01 3.23 16 25 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 26 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 27 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 28 H 0.02 0.91 6.07 -2.38 -0.01 0.90 16 29 H 0.01 0.36 8.05 -2.39 -0.02 0.34 16 30 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -60.00 265.99 7.01 -52.99 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 1.14 Total: 3.23 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 3.21 Total: -32.75 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: 0.64 Total: -68.13 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -60.00 7.01 -52.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306825297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.005 kcal (2) G-P(sol) polarization free energy of solvation -60.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds