Wall clock time and date at job start Mon Mar 30 2020 20:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47220 * 2 1 4 4 C 1.37974 * 120.07655 * 265.00363 * 3 2 1 5 5 C 1.38342 * 120.14875 * 180.25332 * 4 3 2 6 6 C 1.38385 * 120.30524 * 359.44605 * 5 4 3 7 7 C 1.50701 * 119.92116 * 180.25592 * 6 5 4 8 8 C 1.50700 * 109.47163 * 270.29295 * 7 6 5 9 9 H 1.08001 * 119.99957 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99859 * 180.02562 * 8 7 6 11 11 N 1.31505 * 119.99887 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99631 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47290 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46563 * 119.99756 * 12 10 8 15 15 H 1.48496 * 109.46924 * 239.99601 * 12 10 8 16 16 C 1.37922 * 120.15281 * 0.55119 * 6 5 4 17 17 C 1.39608 * 120.07972 * 84.97840 * 3 2 1 18 18 C 1.43205 * 120.14639 * 0.02562 * 17 3 2 19 19 N 3.56117 * 90.43321 * 74.05107 * 2 1 3 20 20 H 1.09006 * 109.47086 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47219 * 299.99753 * 1 2 3 22 22 H 1.08998 * 109.47159 * 59.99981 * 1 2 3 23 23 H 1.09006 * 109.46832 * 239.99731 * 2 1 3 24 24 H 1.09005 * 109.46847 * 120.00272 * 2 1 3 25 25 H 1.08002 * 119.92160 * 359.97132 * 4 3 2 26 26 H 1.08005 * 119.84349 * 179.71729 * 5 4 3 27 27 H 1.08994 * 109.47229 * 30.29466 * 7 6 5 28 28 H 1.09000 * 109.46873 * 150.29448 * 7 6 5 29 29 H 0.97001 * 119.99786 * 180.02562 * 11 10 8 30 30 H 1.07997 * 120.07946 * 179.75021 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3609 2.0380 -1.1894 5 6 2.8272 3.3405 -1.1907 6 6 2.9566 4.0370 -0.0020 7 6 3.4599 5.4574 -0.0140 8 6 4.9621 5.4591 0.1059 9 1 5.4988 4.5250 0.1826 10 6 5.6515 6.6532 0.1176 11 7 4.9980 7.7905 0.0237 12 14 7.5135 6.6552 0.2669 13 1 8.0044 5.2565 0.3567 14 1 8.1050 7.3111 -0.9269 15 1 7.9113 7.3994 1.4887 16 6 2.6317 3.4322 1.1943 17 6 2.1659 2.1157 1.2034 18 6 1.8268 1.4813 2.4417 19 7 1.5569 0.9785 3.4240 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.2581 1.5015 -2.1211 26 1 3.0872 3.8173 -2.1242 27 1 3.1694 5.9379 -0.9481 28 1 3.0279 6.0030 0.8249 29 1 5.4830 8.6305 0.0315 30 1 2.7370 3.9756 2.1216 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306911934.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:40 Heat of formation + Delta-G solvation = 12.295188 kcal Electronic energy + Delta-G solvation = -13180.182969 eV Core-core repulsion = 10938.848887 eV Total energy + Delta-G solvation = -2241.334082 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.67780 -37.59031 -36.01001 -34.58662 -32.22112 -31.82470 -28.61338 -25.63395 -24.76732 -23.41940 -21.91371 -18.88789 -18.41645 -16.85669 -16.76516 -16.43169 -15.27102 -15.10960 -14.62249 -14.48442 -14.31809 -14.14194 -13.94438 -13.63131 -13.38451 -13.20337 -12.63441 -12.58796 -12.44766 -12.17021 -12.05689 -11.74282 -11.43823 -11.34225 -10.58173 -9.79827 -9.34670 -8.17850 -6.29919 -0.09992 0.53552 1.41767 1.43754 1.55663 1.59650 1.99587 2.42799 2.90796 2.99714 3.14573 3.79240 3.93309 4.24563 4.36164 4.49420 4.57557 4.59749 4.66357 4.91152 5.06796 5.08259 5.18266 5.32083 5.38137 5.41961 5.49531 5.58248 5.78066 5.97643 6.03076 6.21672 6.42989 6.83869 7.39019 8.91621 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.041033 B = 0.006780 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.209391 B = 4128.573188 C = 4375.238282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.048 4.048 4 C -0.105 4.105 5 C -0.088 4.088 6 C -0.067 4.067 7 C 0.054 3.946 8 C -0.526 4.526 9 H 0.058 0.942 10 C 0.006 3.994 11 N -0.930 5.930 12 Si 0.960 3.040 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.281 1.281 16 C -0.079 4.079 17 C -0.046 4.046 18 C 0.284 3.716 19 N -0.463 5.463 20 H 0.074 0.926 21 H 0.033 0.967 22 H 0.070 0.930 23 H 0.106 0.894 24 H 0.059 0.941 25 H 0.167 0.833 26 H 0.133 0.867 27 H 0.015 0.985 28 H 0.004 0.996 29 H 0.265 0.735 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.770 -12.971 -4.534 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.051 4.051 4 C -0.123 4.123 5 C -0.107 4.107 6 C -0.067 4.067 7 C 0.017 3.983 8 C -0.564 4.564 9 H 0.076 0.924 10 C -0.192 4.192 11 N -0.570 5.570 12 Si 0.785 3.215 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.207 1.207 16 C -0.100 4.100 17 C -0.050 4.050 18 C -0.030 4.030 19 N -0.139 5.139 20 H 0.093 0.907 21 H 0.053 0.947 22 H 0.089 0.911 23 H 0.125 0.875 24 H 0.078 0.922 25 H 0.184 0.816 26 H 0.151 0.849 27 H 0.033 0.967 28 H 0.022 0.978 29 H 0.073 0.927 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.172 -13.579 -3.004 15.215 hybrid contribution 1.107 1.059 0.107 1.536 sum -5.065 -12.519 -2.897 13.812 Atomic orbital electron populations 1.21740 0.93858 1.02653 1.01915 1.20653 0.96863 0.90755 1.03989 1.20064 0.97317 0.96735 0.90936 1.21220 0.98791 0.94049 0.98216 1.21487 0.96485 0.94873 0.97851 1.20243 0.95740 0.97529 0.93217 1.18136 0.95054 0.88535 0.96560 1.21450 0.92276 0.92587 1.50129 0.92393 1.25853 1.03316 0.95210 0.94806 1.70069 1.37503 0.98055 1.51351 0.85469 0.79790 0.78473 0.77780 1.18844 1.20163 1.20729 1.20984 0.97567 0.92963 0.98493 1.15921 1.08081 0.93929 0.87063 1.25816 0.92272 0.92294 0.92587 1.81175 1.11059 1.10208 1.11456 0.90730 0.94745 0.91075 0.87514 0.92194 0.81556 0.84889 0.96718 0.97773 0.92651 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.89 71.98 0.71 -1.81 16 2 C -0.09 -1.62 5.58 29.85 0.17 -1.46 16 3 C -0.05 -1.20 5.17 -19.60 -0.10 -1.31 16 4 C -0.11 -2.53 9.67 22.23 0.21 -2.31 16 5 C -0.09 -2.80 9.69 22.33 0.22 -2.58 16 6 C -0.07 -2.64 5.06 -19.90 -0.10 -2.74 16 7 C 0.05 2.68 5.10 29.10 0.15 2.83 16 8 C -0.53 -28.46 9.09 25.60 0.23 -28.23 16 9 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 10 C 0.01 0.35 5.46 84.66 0.46 0.81 16 11 N -0.93 -54.29 13.29 21.45 0.28 -54.01 16 12 Si 0.96 42.98 29.54 68.60 2.03 45.01 16 13 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 14 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 16 C -0.08 -2.89 9.41 22.54 0.21 -2.68 16 17 C -0.05 -1.44 5.73 -21.36 -0.12 -1.56 16 18 C 0.28 9.08 13.69 88.33 1.21 10.28 16 19 N -0.46 -15.86 18.54 19.01 0.35 -15.51 16 20 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 21 H 0.03 0.73 7.93 -2.39 -0.02 0.71 16 22 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.11 1.45 8.05 -2.38 -0.02 1.43 16 24 H 0.06 1.26 7.28 -2.38 -0.02 1.24 16 25 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 26 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 27 H 0.01 0.76 8.09 -2.39 -0.02 0.74 16 28 H 0.00 0.21 8.08 -2.39 -0.02 0.19 16 29 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -61.83 272.16 7.04 -54.79 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: 1.12 Total: 0.46 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 3.25 Total: -30.74 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: 0.64 Total: -69.52 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -61.83 7.04 -54.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306911934.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.083 kcal (2) G-P(sol) polarization free energy of solvation -61.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds