Wall clock time and date at job start Mon Mar 30 2020 20:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38260 * 120.00160 * 2 1 4 4 C 1.38213 * 120.00149 * 180.23326 * 3 2 1 5 5 C 1.38254 * 119.99898 * 359.81317 * 4 3 2 6 6 C 1.50701 * 120.00372 * 179.97438 * 5 4 3 7 7 C 1.47195 * 109.47186 * 270.02679 * 6 5 4 8 8 N 5.69672 * 154.26220 * 269.94082 * 2 1 3 9 9 C 1.38214 * 120.00229 * 0.02562 * 5 4 3 10 10 C 1.38211 * 120.00232 * 179.81662 * 2 1 3 11 11 C 1.50697 * 119.99906 * 359.97438 * 10 2 1 12 12 C 1.50700 * 109.47266 * 84.72505 * 11 10 2 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47163 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47290 * 299.99897 * 16 14 12 20 20 H 1.09006 * 109.47218 * 270.18630 * 1 2 3 21 21 H 1.09007 * 109.47241 * 30.18020 * 1 2 3 22 22 H 1.08996 * 109.47559 * 150.18395 * 1 2 3 23 23 H 1.08002 * 119.99730 * 0.02578 * 3 2 1 24 24 H 1.07994 * 119.99926 * 179.79371 * 4 3 2 25 25 H 1.09004 * 109.46532 * 30.02449 * 6 5 4 26 26 H 1.08999 * 109.47492 * 150.01870 * 6 5 4 27 27 H 1.07999 * 120.00493 * 179.97438 * 9 5 4 28 28 H 1.09004 * 109.47205 * 324.72598 * 11 10 2 29 29 H 1.08997 * 109.47395 * 204.73090 * 11 10 2 30 30 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2716 0.0000 -0.0058 6 6 5.7786 -0.0001 -0.0117 7 6 6.2639 -0.0015 -1.4014 8 7 6.6385 -0.0026 -2.4738 9 6 3.5806 -1.1970 -0.0025 10 6 2.1980 -1.1969 0.0038 11 6 1.4446 -2.5020 0.0086 12 6 1.0797 -2.8766 -1.4048 13 1 1.3653 -2.2341 -2.2246 14 6 0.3813 -4.0396 -1.6513 15 7 0.0383 -4.8248 -0.6535 16 14 -0.0703 -4.5043 -3.4033 17 1 1.1671 -4.6508 -4.2112 18 1 -0.8128 -5.7903 -3.3986 19 1 -0.9236 -3.4416 -3.9930 20 1 -0.3634 0.0033 1.0277 21 1 -0.3634 0.8884 -0.5167 22 1 -0.3634 -0.8916 -0.5109 23 1 1.6582 2.1327 0.0004 24 1 4.1203 2.1326 -0.0082 25 1 6.1440 0.8904 0.4998 26 1 6.1440 -0.8895 0.5016 27 1 4.1205 -2.1323 -0.0037 28 1 0.5365 -2.3952 0.6021 29 1 2.0714 -3.2819 0.4409 30 1 -0.4533 -5.6428 -0.8270 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307039422.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:55 Heat of formation + Delta-G solvation = 26.377501 kcal Electronic energy + Delta-G solvation = -13317.998083 eV Core-core repulsion = 11077.274656 eV Total energy + Delta-G solvation = -2240.723427 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.18683 -36.52234 -34.06374 -32.83595 -31.13961 -29.42123 -27.28999 -24.96344 -23.31970 -21.31530 -19.66628 -17.39587 -16.32819 -15.49877 -15.39081 -14.68470 -14.30140 -13.83319 -13.29153 -13.16503 -12.67818 -12.51287 -12.11919 -11.88869 -11.85938 -11.32209 -11.30114 -11.20505 -10.93815 -10.73281 -10.47760 -10.22986 -9.56620 -9.43810 -8.44761 -8.16861 -7.76623 -6.07612 -4.11315 1.78524 2.04786 2.93007 2.95365 3.30456 3.34686 3.38667 4.07534 4.39898 4.55523 5.03608 5.13641 5.27224 5.44940 5.47461 5.60873 5.74276 5.98916 6.10074 6.27023 6.34950 6.47102 6.72082 6.87503 6.95029 7.06765 7.24545 7.46829 7.64972 7.73184 7.79806 7.88770 8.28435 8.94002 9.52784 11.01963 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.026166 B = 0.008599 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.837912 B = 3255.457016 C = 3834.537277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 C -0.126 4.126 4 C -0.131 4.131 5 C -0.110 4.110 6 C 0.022 3.978 7 C 0.215 3.785 8 N -0.444 5.444 9 C -0.107 4.107 10 C -0.035 4.035 11 C 0.048 3.952 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 H 0.060 0.940 21 H 0.051 0.949 22 H 0.093 0.907 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.033 0.967 29 H 0.027 0.973 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.625 9.695 4.995 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.149 4.149 5 C -0.111 4.111 6 C -0.018 4.018 7 C -0.103 4.103 8 N -0.121 5.121 9 C -0.125 4.125 10 C -0.036 4.036 11 C 0.011 3.989 12 C -0.549 4.549 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.111 0.889 23 H 0.131 0.869 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.106 9.517 3.424 11.814 hybrid contribution -0.435 -0.320 -0.597 0.805 sum 5.671 9.197 2.827 11.169 Atomic orbital electron populations 1.20861 0.91502 1.03509 1.01613 1.19890 0.96348 0.92462 0.99170 1.20908 0.93911 0.97296 1.02254 1.20714 0.94257 0.96527 1.03395 1.19258 0.92365 0.94172 1.05332 1.18128 0.93053 1.05805 0.84801 1.29178 0.92862 0.93047 0.95213 1.81179 1.09822 1.09033 1.12089 1.20978 0.94341 0.96682 1.00543 1.20577 0.93280 0.97001 0.92695 1.18366 0.95057 0.87710 0.97739 1.20976 1.35660 1.06358 0.91905 0.92631 1.24986 0.95826 0.96256 0.97068 1.69941 1.39234 1.13183 1.30815 0.86643 0.78710 0.77754 0.84900 1.20194 1.21192 1.20128 0.92105 0.92962 0.88861 0.86897 0.86922 0.86994 0.86726 0.86197 0.94843 0.95458 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.22 36.00 0.33 -1.75 16 2 C -0.08 -1.47 5.88 -104.63 -0.62 -2.08 16 3 C -0.13 -1.98 9.70 -39.58 -0.38 -2.36 16 4 C -0.13 -1.86 9.70 -39.58 -0.38 -2.25 16 5 C -0.11 -1.60 5.09 -104.62 -0.53 -2.13 16 6 C 0.02 0.23 5.83 -30.67 -0.18 0.05 16 7 C 0.21 3.02 15.41 -20.76 -0.32 2.70 16 8 N -0.44 -7.62 18.54 42.15 0.78 -6.84 16 9 C -0.11 -1.93 9.34 -39.58 -0.37 -2.30 16 10 C -0.04 -0.73 5.07 -104.63 -0.53 -1.26 16 11 C 0.05 1.18 4.42 -29.04 -0.13 1.05 16 12 C -0.51 -13.89 8.30 -34.44 -0.29 -14.18 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.05 0.79 8.09 -51.92 -0.42 0.37 16 22 H 0.09 1.93 6.15 -51.93 -0.32 1.61 16 23 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 24 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 25 H 0.11 0.79 8.09 -51.93 -0.42 0.37 16 26 H 0.11 0.95 8.09 -51.93 -0.42 0.53 16 27 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.03 0.85 7.01 -51.93 -0.36 0.49 16 29 H 0.03 0.71 8.05 -51.93 -0.42 0.29 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 269.93 15.07 4.07 4.07 Total: -1.00 -30.77 269.93 -6.52 -37.29 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -3.59 Total: -2.98 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -3.49 Total: -22.94 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 1.52 Total: -31.86 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.77 -6.52 -37.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307039422.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.671 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds