Wall clock time and date at job start Mon Mar 30 2020 20:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38260 * 120.00160 * 2 1 4 4 C 1.38213 * 120.00149 * 180.23326 * 3 2 1 5 5 C 1.38254 * 119.99898 * 359.81317 * 4 3 2 6 6 C 1.50701 * 120.00372 * 179.97438 * 5 4 3 7 7 C 1.47195 * 109.47186 * 270.02679 * 6 5 4 8 8 N 5.69672 * 154.26220 * 269.94082 * 2 1 3 9 9 C 1.38214 * 120.00229 * 0.02562 * 5 4 3 10 10 C 1.38211 * 120.00232 * 179.81662 * 2 1 3 11 11 C 1.50697 * 119.99906 * 359.97438 * 10 2 1 12 12 C 1.50700 * 109.47266 * 84.72505 * 11 10 2 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47163 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47290 * 299.99897 * 16 14 12 20 20 H 1.09006 * 109.47218 * 270.18630 * 1 2 3 21 21 H 1.09007 * 109.47241 * 30.18020 * 1 2 3 22 22 H 1.08996 * 109.47559 * 150.18395 * 1 2 3 23 23 H 1.08002 * 119.99730 * 0.02578 * 3 2 1 24 24 H 1.07994 * 119.99926 * 179.79371 * 4 3 2 25 25 H 1.09004 * 109.46532 * 30.02449 * 6 5 4 26 26 H 1.08999 * 109.47492 * 150.01870 * 6 5 4 27 27 H 1.07999 * 120.00493 * 179.97438 * 9 5 4 28 28 H 1.09004 * 109.47205 * 324.72598 * 11 10 2 29 29 H 1.08997 * 109.47395 * 204.73090 * 11 10 2 30 30 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2716 0.0000 -0.0058 6 6 5.7786 -0.0001 -0.0117 7 6 6.2639 -0.0015 -1.4014 8 7 6.6385 -0.0026 -2.4738 9 6 3.5806 -1.1970 -0.0025 10 6 2.1980 -1.1969 0.0038 11 6 1.4446 -2.5020 0.0086 12 6 1.0797 -2.8766 -1.4048 13 1 1.3653 -2.2341 -2.2246 14 6 0.3813 -4.0396 -1.6513 15 7 0.0383 -4.8248 -0.6535 16 14 -0.0703 -4.5043 -3.4033 17 1 1.1671 -4.6508 -4.2112 18 1 -0.8128 -5.7903 -3.3986 19 1 -0.9236 -3.4416 -3.9930 20 1 -0.3634 0.0033 1.0277 21 1 -0.3634 0.8884 -0.5167 22 1 -0.3634 -0.8916 -0.5109 23 1 1.6582 2.1327 0.0004 24 1 4.1203 2.1326 -0.0082 25 1 6.1440 0.8904 0.4998 26 1 6.1440 -0.8895 0.5016 27 1 4.1205 -2.1323 -0.0037 28 1 0.5365 -2.3952 0.6021 29 1 2.0714 -3.2819 0.4409 30 1 -0.4533 -5.6428 -0.8270 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307039422.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:54 Heat of formation + Delta-G solvation = 9.350504 kcal Electronic energy + Delta-G solvation = -13318.736429 eV Core-core repulsion = 11077.274656 eV Total energy + Delta-G solvation = -2241.461773 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48440 -37.70187 -35.69327 -34.44715 -32.74333 -30.58298 -29.07263 -26.29184 -25.14228 -22.71360 -21.04163 -18.59191 -18.33399 -16.80444 -16.68492 -16.37952 -15.69633 -14.98099 -14.75504 -14.47669 -14.21973 -13.88036 -13.77342 -13.42456 -13.07203 -12.99650 -12.83598 -12.57154 -12.43791 -12.32343 -12.21419 -11.65292 -11.53617 -11.15677 -10.59493 -9.47981 -9.17978 -8.20100 -6.31653 0.51198 0.72698 1.36730 1.38042 1.46365 1.85596 1.88248 2.37687 2.90404 3.10369 3.43946 3.98149 4.10857 4.29296 4.33714 4.49222 4.70101 4.81677 4.85453 4.92329 5.01914 5.13610 5.26873 5.31130 5.46639 5.58757 5.70467 5.72862 5.83507 6.15330 6.19083 6.34791 6.67381 6.80624 7.35941 8.88415 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.026166 B = 0.008599 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.837912 B = 3255.457016 C = 3834.537277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.100 4.100 6 C 0.028 3.972 7 C 0.238 3.762 8 N -0.506 5.506 9 C -0.123 4.123 10 C -0.075 4.075 11 C 0.060 3.940 12 C -0.520 4.520 13 H 0.046 0.954 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.954 3.046 17 H -0.275 1.275 18 H -0.278 1.278 19 H -0.268 1.268 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.051 0.949 23 H 0.144 0.856 24 H 0.158 0.842 25 H 0.164 0.836 26 H 0.141 0.859 27 H 0.114 0.886 28 H 0.010 0.990 29 H -0.001 1.001 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.906 12.127 5.059 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.099 4.099 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.102 4.102 6 C -0.011 4.011 7 C -0.078 4.078 8 N -0.184 5.184 9 C -0.142 4.142 10 C -0.075 4.075 11 C 0.023 3.977 12 C -0.558 4.558 13 H 0.064 0.936 14 C -0.189 4.189 15 N -0.567 5.567 16 Si 0.779 3.221 17 H -0.200 1.200 18 H -0.204 1.204 19 H -0.193 1.193 20 H 0.088 0.912 21 H 0.096 0.904 22 H 0.070 0.930 23 H 0.161 0.839 24 H 0.176 0.824 25 H 0.181 0.819 26 H 0.159 0.841 27 H 0.132 0.868 28 H 0.028 0.972 29 H 0.018 0.982 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.389 11.955 3.490 14.482 hybrid contribution -0.802 -1.006 -0.542 1.397 sum 6.587 10.949 2.948 13.113 Atomic orbital electron populations 1.20784 0.91632 1.02617 1.02022 1.20042 0.96659 0.93020 1.00202 1.21257 0.94967 0.97058 1.00930 1.21284 0.93868 0.98093 1.00295 1.19550 0.94635 0.92839 1.03134 1.18470 0.89859 1.09644 0.83154 1.29792 0.91411 0.91105 0.95472 1.81214 1.11765 1.11411 1.14048 1.21063 0.93446 0.98318 1.01343 1.20311 0.94549 0.95748 0.96936 1.18059 0.94103 0.89679 0.95869 1.21245 1.35310 1.06213 0.92987 0.93581 1.25792 0.95859 0.96306 1.00970 1.70052 1.40132 1.13670 1.32807 0.85672 0.78486 0.77802 0.80168 1.20004 1.20353 1.19289 0.91171 0.90390 0.92982 0.83850 0.82409 0.81900 0.84126 0.86803 0.97156 0.98247 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.05 9.22 71.23 0.66 -3.39 16 2 C -0.10 -3.64 5.88 -19.87 -0.12 -3.76 16 3 C -0.12 -3.49 9.70 22.27 0.22 -3.27 16 4 C -0.12 -2.78 9.70 22.27 0.22 -2.56 16 5 C -0.10 -2.57 5.09 -19.87 -0.10 -2.67 16 6 C 0.03 0.44 5.83 28.04 0.16 0.61 16 7 C 0.24 5.97 15.41 89.44 1.38 7.35 16 8 N -0.51 -16.56 18.54 20.00 0.37 -16.19 16 9 C -0.12 -4.38 9.34 22.27 0.21 -4.17 16 10 C -0.08 -3.19 5.07 -19.87 -0.10 -3.29 16 11 C 0.06 3.13 4.42 29.10 0.13 3.25 16 12 C -0.52 -29.51 8.30 25.60 0.21 -29.30 16 13 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 14 C 0.01 0.52 5.46 84.66 0.46 0.98 16 15 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 16 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 17 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 21 H 0.08 2.28 8.09 -2.38 -0.02 2.26 16 22 H 0.05 2.26 6.15 -2.39 -0.01 2.24 16 23 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 24 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 25 H 0.16 1.11 8.09 -2.38 -0.02 1.09 16 26 H 0.14 1.66 8.09 -2.39 -0.02 1.64 16 27 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.01 0.56 7.01 -2.38 -0.02 0.55 16 29 H 0.00 -0.05 8.05 -2.39 -0.02 -0.06 16 30 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -71.05 269.93 7.14 -63.92 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: 1.13 Total: 0.77 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.32 Total: -40.21 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: 0.66 Total: -71.36 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.05 7.14 -63.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307039422.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.268 kcal (2) G-P(sol) polarization free energy of solvation -71.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds