Wall clock time and date at job start Mon Mar 30 2020 20:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 119.99668 * 2 1 4 4 C 1.38211 * 120.00176 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99732 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99880 * 179.97438 * 5 4 3 7 7 C 1.47194 * 109.47158 * 265.00095 * 6 5 4 8 8 N 5.69850 * 154.42898 * 265.00188 * 2 1 3 9 9 C 1.38210 * 120.00106 * 0.25347 * 5 4 3 10 10 C 1.50699 * 120.00166 * 179.72002 * 9 5 4 11 11 C 1.50709 * 109.46805 * 85.00204 * 10 9 5 12 12 H 1.07999 * 119.99618 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00036 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00321 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99854 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47161 * 89.99823 * 15 13 11 17 17 H 1.48506 * 109.46927 * 209.99605 * 15 13 11 18 18 H 1.48499 * 109.47187 * 329.99602 * 15 13 11 19 19 C 1.38212 * 120.00678 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.47036 * 90.00222 * 1 2 3 21 21 H 1.09001 * 109.47145 * 209.99500 * 1 2 3 22 22 H 1.09001 * 109.47354 * 329.99788 * 1 2 3 23 23 H 1.07999 * 120.00101 * 359.97438 * 3 2 1 24 24 H 1.07999 * 120.00450 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.47152 * 145.00042 * 6 5 4 26 26 H 1.09001 * 109.46980 * 25.00142 * 6 5 4 27 27 H 1.08995 * 109.47318 * 205.00262 * 10 9 5 28 28 H 1.08999 * 109.47290 * 325.00380 * 10 9 5 29 29 H 0.96995 * 120.00616 * 180.02562 * 14 13 11 30 30 H 1.07999 * 119.99381 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0003 -0.0017 7 6 6.2683 -0.1212 -1.3845 8 7 6.6473 -0.2143 -2.4503 9 6 3.5807 -1.1968 -0.0053 10 6 4.3343 -2.5018 -0.0117 11 6 4.6937 -2.8812 1.4019 12 1 4.4050 -2.2414 2.2227 13 6 5.3903 -4.0454 1.6473 14 7 5.7036 -4.3768 2.8808 15 14 5.8891 -5.1523 0.2276 16 1 7.2292 -4.7480 -0.2681 17 1 5.9377 -6.5619 0.6924 18 1 4.8968 -5.0270 -0.8701 19 6 2.1982 -1.1969 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6582 2.1327 -0.0004 24 1 4.1203 2.1329 -0.0010 25 1 6.1426 -0.8413 0.5878 26 1 6.1423 0.9319 0.4319 27 1 3.7091 -3.2802 -0.4490 28 1 5.2445 -2.3929 -0.6013 29 1 6.1939 -5.1956 3.0535 30 1 1.6582 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307091102.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:01 Heat of formation + Delta-G solvation = 13.589529 kcal Electronic energy + Delta-G solvation = -13509.776063 eV Core-core repulsion = 11268.498108 eV Total energy + Delta-G solvation = -2241.277955 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58765 -37.66233 -35.68792 -34.46805 -33.03040 -30.63012 -29.48865 -26.25721 -24.85283 -22.73813 -20.90036 -19.00650 -18.44241 -16.82536 -16.79666 -16.31727 -15.62432 -14.86396 -14.73363 -14.66768 -14.39584 -13.96560 -13.86458 -13.67634 -13.21591 -13.00552 -12.94925 -12.61894 -12.40943 -12.26889 -11.93041 -11.66444 -11.61148 -11.31508 -10.77893 -9.48751 -9.20562 -8.28732 -6.31104 0.49362 0.69234 1.31296 1.35368 1.43874 1.80635 1.82425 2.32517 2.85778 3.05783 3.37545 3.98765 4.06232 4.20225 4.26963 4.44203 4.65138 4.77078 4.86394 4.90577 4.97842 5.00986 5.05085 5.17995 5.35520 5.43265 5.58147 5.66755 5.82805 6.00419 6.23511 6.34063 6.60328 6.75978 7.32167 8.86738 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.023628 B = 0.010749 C = 0.008501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.754890 B = 2604.212970 C = 3292.853922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.099 4.099 5 C -0.112 4.112 6 C 0.012 3.988 7 C 0.244 3.756 8 N -0.496 5.496 9 C -0.050 4.050 10 C 0.019 3.981 11 C -0.503 4.503 12 H 0.045 0.955 13 C 0.023 3.977 14 N -0.939 5.939 15 Si 0.925 3.075 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.257 1.257 19 C -0.145 4.145 20 H 0.079 0.921 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.151 0.849 24 H 0.156 0.844 25 H 0.117 0.883 26 H 0.156 0.844 27 H 0.018 0.982 28 H 0.022 0.978 29 H 0.267 0.733 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.885 11.316 -4.745 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.088 4.088 3 C -0.158 4.158 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.027 4.027 7 C -0.072 4.072 8 N -0.174 5.174 9 C -0.050 4.050 10 C -0.018 4.018 11 C -0.541 4.541 12 H 0.064 0.936 13 C -0.176 4.176 14 N -0.579 5.579 15 Si 0.749 3.251 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.181 1.181 19 C -0.163 4.163 20 H 0.097 0.903 21 H 0.081 0.919 22 H 0.103 0.897 23 H 0.169 0.831 24 H 0.173 0.827 25 H 0.134 0.866 26 H 0.174 0.826 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.225 11.036 -6.240 14.124 hybrid contribution 0.331 -1.245 0.190 1.303 sum -5.895 9.791 -6.050 12.931 Atomic orbital electron populations 1.20811 0.89391 1.03438 1.02954 1.20264 0.97492 0.92743 0.98264 1.21254 0.94116 0.97984 1.02413 1.21338 0.94741 0.97268 0.98311 1.19365 0.93701 0.93299 1.04937 1.18434 0.92118 1.08221 0.83976 1.29478 0.91537 0.91125 0.95070 1.81083 1.11281 1.11319 1.13708 1.20032 0.94308 0.95201 0.95482 1.18667 0.95095 0.91919 0.96124 1.21008 1.34791 1.06523 0.91744 0.93641 1.25674 0.95678 0.98865 0.97334 1.69998 1.41281 1.25671 1.20970 0.86038 0.79574 0.78734 0.80706 1.19549 1.20714 1.18093 1.21020 0.93473 0.98373 1.03464 0.90273 0.91912 0.89734 0.83135 0.82682 0.86561 0.82630 0.96353 0.96011 0.92404 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 10.01 71.24 0.71 -1.55 16 2 C -0.09 -2.48 5.88 -19.87 -0.12 -2.59 16 3 C -0.14 -3.44 9.70 22.27 0.22 -3.23 16 4 C -0.10 -2.54 9.68 22.27 0.22 -2.32 16 5 C -0.11 -3.64 5.09 -19.86 -0.10 -3.74 16 6 C 0.01 0.35 5.19 28.04 0.15 0.49 16 7 C 0.24 8.21 14.56 89.45 1.30 9.51 16 8 N -0.50 -18.85 18.53 19.99 0.37 -18.48 16 9 C -0.05 -1.97 5.07 -19.87 -0.10 -2.07 16 10 C 0.02 0.88 3.50 29.10 0.10 0.99 16 11 C -0.50 -27.17 8.85 25.60 0.23 -26.94 16 12 H 0.05 2.70 7.98 -2.91 -0.02 2.68 16 13 C 0.02 1.27 5.47 84.65 0.46 1.74 16 14 N -0.94 -56.28 13.96 21.45 0.30 -55.98 16 15 Si 0.92 43.70 27.47 68.60 1.88 45.59 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.26 -11.69 6.54 99.48 0.65 -11.04 16 19 C -0.15 -5.19 9.34 22.27 0.21 -4.98 16 20 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 22 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 23 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 24 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 25 H 0.12 4.08 6.43 -2.39 -0.02 4.06 16 26 H 0.16 3.06 8.05 -2.39 -0.02 3.04 16 27 H 0.02 0.86 7.11 -2.39 -0.02 0.85 16 28 H 0.02 1.00 5.81 -2.39 -0.01 0.98 16 29 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.11 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -66.39 265.24 6.90 -59.49 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.08 Total: 4.09 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 3.27 Total: -34.70 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: 0.67 Total: -74.46 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.59 kcal Total: -66.39 6.90 -59.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307091102.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.076 kcal (2) G-P(sol) polarization free energy of solvation -66.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds