Wall clock time and date at job start Mon Mar 30 2020 20:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86796 * 120.00316 * 2 1 4 4 H 1.48494 * 109.47014 * 239.99437 * 3 2 1 5 5 H 1.48497 * 109.46971 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46986 * 119.99484 * 3 2 1 7 7 C 1.40057 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99440 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99973 * 0.02562 * 7 2 1 10 10 O 1.21685 * 120.00011 * 354.71079 * 9 7 2 11 11 N 1.34779 * 119.99649 * 174.98412 * 9 7 2 12 12 C 1.44580 * 118.64211 * 4.40468 * 11 9 7 13 13 C 1.54865 * 109.60080 * 89.25379 * 12 11 9 14 14 C 1.47093 * 110.32764 * 71.25998 * 13 12 11 15 15 C 1.52561 * 114.32501 * 297.20328 * 14 13 12 16 16 C 1.50882 * 109.36078 * 85.01301 * 15 14 13 17 17 H 1.08993 * 109.36892 * 28.17227 * 16 15 14 18 18 F 1.39901 * 109.36964 * 147.92180 * 16 15 14 19 19 C 1.47604 * 118.64230 * 184.13188 * 11 9 7 20 20 H 0.97001 * 119.98999 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.44833 * 209.28688 * 12 11 9 22 22 H 1.08999 * 109.45480 * 329.20890 * 12 11 9 23 23 H 1.08996 * 109.33111 * 191.52870 * 13 12 11 24 24 H 1.09006 * 109.32324 * 311.17226 * 13 12 11 25 25 H 1.08996 * 108.50869 * 58.45545 * 14 13 12 26 26 H 1.09004 * 108.51384 * 175.94582 * 14 13 12 27 27 H 1.09007 * 109.49155 * 204.97616 * 15 14 13 28 28 H 1.09000 * 109.49529 * 325.01741 * 15 14 13 29 29 H 1.09001 * 108.94485 * 342.84430 * 19 11 9 30 30 H 1.08996 * 108.94556 * 101.47074 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.0946 1.6962 -1.2124 5 1 1.2759 2.7464 -0.0006 6 1 3.0945 1.6963 1.2126 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2749 -2.4806 0.0005 10 8 0.0619 -2.4827 0.0972 11 7 1.9450 -3.6456 -0.1010 12 6 3.3904 -3.6151 -0.1111 13 6 3.9221 -3.7047 1.3406 14 6 3.7083 -5.0560 1.8807 15 6 2.2424 -5.4646 1.9896 16 6 1.7788 -6.0216 0.6662 17 1 2.6274 -6.4603 0.1414 18 9 0.8121 -7.0077 0.8909 19 6 1.1728 -4.9003 -0.1911 20 1 -0.4849 0.8401 -0.0004 21 1 3.7672 -4.4596 -0.6883 22 1 3.7307 -2.6847 -0.5656 23 1 4.9881 -3.4772 1.3491 24 1 3.3942 -2.9823 1.9633 25 1 4.2199 -5.7711 1.2365 26 1 4.1564 -5.1071 2.8730 27 1 2.1333 -6.2253 2.7626 28 1 1.6404 -4.5937 2.2490 29 1 0.1521 -4.7124 0.1421 30 1 1.1494 -5.2276 -1.2305 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307731543.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:41 Heat of formation + Delta-G solvation = -95.095026 kcal Electronic energy + Delta-G solvation = -15149.596475 eV Core-core repulsion = 12472.836379 eV Total energy + Delta-G solvation = -2676.760096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.32893 -38.67309 -35.93254 -32.85973 -32.36749 -31.45596 -26.88642 -25.49300 -24.58739 -21.27775 -20.33135 -18.85696 -16.62856 -16.17106 -15.68339 -15.33821 -15.24894 -14.15686 -13.88597 -13.58586 -13.06957 -12.95701 -12.64185 -12.27371 -11.64462 -11.38901 -11.19787 -11.15718 -10.83839 -10.70658 -10.38452 -10.28452 -10.12769 -10.08094 -9.86457 -8.88129 -7.63828 -7.28192 -6.23269 -4.68528 3.12830 3.18282 3.19661 4.03050 4.39298 4.52617 4.79500 4.96215 5.16591 5.22895 5.44149 5.46484 5.69974 5.80723 6.00394 6.06539 6.19355 6.24962 6.37416 6.40316 6.55115 6.58712 6.67958 6.84979 7.41822 7.66362 8.08347 8.26869 8.98448 9.36678 10.53131 10.71543 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.043171 B = 0.009783 C = 0.008534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.433638 B = 2861.465571 C = 3280.120718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.554 3.446 10 O -0.577 6.577 11 N -0.635 5.635 12 C 0.129 3.871 13 C -0.144 4.144 14 C -0.106 4.106 15 C -0.143 4.143 16 C 0.083 3.917 17 H 0.076 0.924 18 F -0.217 7.217 19 C 0.098 3.902 20 H 0.269 0.731 21 H 0.047 0.953 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.345 -6.839 1.480 10.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.092 0.908 9 C 0.360 3.640 10 O -0.459 6.459 11 N -0.372 5.372 12 C 0.004 3.996 13 C -0.183 4.183 14 C -0.143 4.143 15 C -0.180 4.180 16 C 0.045 3.955 17 H 0.094 0.906 18 F -0.198 7.198 19 C -0.027 4.027 20 H 0.080 0.920 21 H 0.066 0.934 22 H 0.104 0.896 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.466 -6.767 1.521 10.190 hybrid contribution 0.528 0.659 0.045 0.846 sum 7.994 -6.108 1.566 10.182 Atomic orbital electron populations 1.70011 1.07095 1.27466 1.34955 1.25753 0.94611 1.00343 0.92612 0.86451 0.79859 0.81111 0.79477 1.19247 1.20574 1.19219 1.20962 0.93672 0.89020 1.54122 0.90754 1.18348 0.87020 0.82370 0.76290 1.90595 1.14534 1.86084 1.54719 1.47670 1.04841 1.05120 1.79583 1.21240 0.82067 1.01727 0.94595 1.21344 1.00587 0.97119 0.99282 1.20294 0.95149 0.98023 1.00844 1.21682 0.97902 1.02296 0.96165 1.21786 0.88928 0.86987 0.97776 0.90570 1.92785 1.66882 1.64147 1.96028 1.21776 0.98425 0.84882 0.97614 0.91997 0.93429 0.89596 0.91915 0.90795 0.92853 0.92606 0.91378 0.89833 0.88842 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.68 11.84 55.55 0.66 -22.03 16 2 C 0.09 2.37 5.50 -17.36 -0.10 2.27 16 3 Si 0.91 19.68 29.56 -169.99 -5.02 14.66 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.54 -14.70 8.67 -35.63 -0.31 -15.01 16 8 H 0.07 1.82 5.89 -52.49 -0.31 1.51 16 9 C 0.55 15.40 7.54 -12.99 -0.10 15.30 16 10 O -0.58 -18.49 14.31 5.20 0.07 -18.42 16 11 N -0.63 -14.02 2.25 -174.41 -0.39 -14.41 16 12 C 0.13 2.30 5.15 -4.08 -0.02 2.28 16 13 C -0.14 -2.28 5.74 -28.58 -0.16 -2.44 16 14 C -0.11 -1.48 5.15 -29.79 -0.15 -1.63 16 15 C -0.14 -2.29 5.27 -28.02 -0.15 -2.43 16 16 C 0.08 1.36 3.68 -27.48 -0.10 1.26 16 17 H 0.08 1.08 7.32 -51.93 -0.38 0.70 16 18 F -0.22 -3.80 17.02 2.25 0.04 -3.77 16 19 C 0.10 1.96 5.83 -3.12 -0.02 1.94 16 20 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 21 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 22 H 0.09 1.61 5.83 -51.93 -0.30 1.31 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 25 H 0.05 0.66 7.36 -51.93 -0.38 0.28 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 28 H 0.08 1.61 7.48 -51.93 -0.39 1.23 16 29 H 0.09 2.17 6.91 -51.93 -0.36 1.81 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 246.61 15.07 3.72 3.72 Total: -1.00 -32.20 246.61 -5.82 -38.02 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -3.78 Total: 0.68 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.11 Total: 1.55 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.27 Total: -36.44 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.07 Total: -18.42 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.20 -5.82 -38.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307731543.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.072 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds