Wall clock time and date at job start Mon Mar 30 2020 20:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86796 * 120.00316 * 2 1 4 4 H 1.48494 * 109.47014 * 239.99437 * 3 2 1 5 5 H 1.48497 * 109.46971 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46986 * 119.99484 * 3 2 1 7 7 C 1.40057 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99440 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99973 * 0.02562 * 7 2 1 10 10 O 1.21685 * 120.00011 * 354.71079 * 9 7 2 11 11 N 1.34779 * 119.99649 * 174.98412 * 9 7 2 12 12 C 1.44580 * 118.64211 * 4.40468 * 11 9 7 13 13 C 1.54865 * 109.60080 * 89.25379 * 12 11 9 14 14 C 1.47093 * 110.32764 * 71.25998 * 13 12 11 15 15 C 1.52561 * 114.32501 * 297.20328 * 14 13 12 16 16 C 1.50882 * 109.36078 * 85.01301 * 15 14 13 17 17 H 1.08993 * 109.36892 * 28.17227 * 16 15 14 18 18 F 1.39901 * 109.36964 * 147.92180 * 16 15 14 19 19 C 1.47604 * 118.64230 * 184.13188 * 11 9 7 20 20 H 0.97001 * 119.98999 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.44833 * 209.28688 * 12 11 9 22 22 H 1.08999 * 109.45480 * 329.20890 * 12 11 9 23 23 H 1.08996 * 109.33111 * 191.52870 * 13 12 11 24 24 H 1.09006 * 109.32324 * 311.17226 * 13 12 11 25 25 H 1.08996 * 108.50869 * 58.45545 * 14 13 12 26 26 H 1.09004 * 108.51384 * 175.94582 * 14 13 12 27 27 H 1.09007 * 109.49155 * 204.97616 * 15 14 13 28 28 H 1.09000 * 109.49529 * 325.01741 * 15 14 13 29 29 H 1.09001 * 108.94485 * 342.84430 * 19 11 9 30 30 H 1.08996 * 108.94556 * 101.47074 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.0946 1.6962 -1.2124 5 1 1.2759 2.7464 -0.0006 6 1 3.0945 1.6963 1.2126 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2749 -2.4806 0.0005 10 8 0.0619 -2.4827 0.0972 11 7 1.9450 -3.6456 -0.1010 12 6 3.3904 -3.6151 -0.1111 13 6 3.9221 -3.7047 1.3406 14 6 3.7083 -5.0560 1.8807 15 6 2.2424 -5.4646 1.9896 16 6 1.7788 -6.0216 0.6662 17 1 2.6274 -6.4603 0.1414 18 9 0.8121 -7.0077 0.8909 19 6 1.1728 -4.9003 -0.1911 20 1 -0.4849 0.8401 -0.0004 21 1 3.7672 -4.4596 -0.6883 22 1 3.7307 -2.6847 -0.5656 23 1 4.9881 -3.4772 1.3491 24 1 3.3942 -2.9823 1.9633 25 1 4.2199 -5.7711 1.2365 26 1 4.1564 -5.1071 2.8730 27 1 2.1333 -6.2253 2.7626 28 1 1.6404 -4.5937 2.2490 29 1 0.1521 -4.7124 0.1421 30 1 1.1494 -5.2276 -1.2305 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307731543.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:39 Heat of formation + Delta-G solvation = -116.442515 kcal Electronic energy + Delta-G solvation = -15150.522171 eV Core-core repulsion = 12472.836379 eV Total energy + Delta-G solvation = -2677.685792 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.71286 -40.37292 -37.72797 -34.78221 -34.18377 -32.93015 -28.79671 -27.15633 -26.06358 -22.97000 -21.60469 -20.62989 -18.42552 -17.90840 -17.33925 -16.83469 -16.75098 -15.96594 -15.47507 -15.03875 -14.63098 -14.44660 -14.20038 -13.88558 -13.38646 -13.12610 -12.80475 -12.78870 -12.53890 -12.37651 -12.07387 -11.62320 -11.57859 -11.56076 -11.20874 -10.91205 -9.80557 -9.10385 -8.28855 -6.83162 1.40284 1.43519 1.55076 2.22857 2.44751 2.71929 3.44441 3.55708 3.70567 3.86263 3.97488 4.15893 4.20077 4.40956 4.63640 4.70270 4.80945 4.87536 5.01247 5.13869 5.20288 5.26327 5.31539 5.42920 5.55981 5.82759 6.19235 6.34944 6.88403 7.41605 8.46522 8.67444 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.043171 B = 0.009783 C = 0.008534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.433638 B = 2861.465571 C = 3280.120718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.026 3.974 3 Si 0.994 3.006 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.561 4.561 8 H 0.099 0.901 9 C 0.535 3.465 10 O -0.636 6.636 11 N -0.631 5.631 12 C 0.119 3.881 13 C -0.136 4.136 14 C -0.104 4.104 15 C -0.142 4.142 16 C 0.092 3.908 17 H 0.119 0.881 18 F -0.223 7.223 19 C 0.095 3.905 20 H 0.273 0.727 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.034 0.966 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.763 -7.420 1.454 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.189 4.189 3 Si 0.814 3.186 4 H -0.174 1.174 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.597 4.597 8 H 0.117 0.883 9 C 0.341 3.659 10 O -0.524 6.524 11 N -0.367 5.367 12 C -0.005 4.005 13 C -0.175 4.175 14 C -0.141 4.141 15 C -0.180 4.180 16 C 0.056 3.944 17 H 0.137 0.863 18 F -0.204 7.204 19 C -0.030 4.030 20 H 0.083 0.917 21 H 0.105 0.895 22 H 0.093 0.907 23 H 0.116 0.884 24 H 0.053 0.947 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.944 -7.401 1.494 13.295 hybrid contribution -0.555 0.750 0.039 0.934 sum 10.389 -6.650 1.532 12.430 Atomic orbital electron populations 1.70209 1.09680 1.28888 1.36681 1.27043 0.95449 1.05097 0.91265 0.85115 0.78240 0.74793 0.80480 1.17449 1.20377 1.17690 1.21486 0.94964 0.89331 1.53895 0.88327 1.18804 0.86601 0.84504 0.75944 1.90544 1.17070 1.87453 1.57309 1.47467 1.06703 1.04268 1.78247 1.21567 0.79200 1.02897 0.96821 1.21283 1.01950 0.97467 0.96803 1.20287 0.93544 0.97415 1.02830 1.21690 0.98980 1.00931 0.96388 1.21816 0.89292 0.85604 0.97729 0.86300 1.92780 1.67528 1.64086 1.96039 1.21860 0.96441 0.85485 0.99185 0.91743 0.89544 0.90690 0.88405 0.94673 0.89506 0.90472 0.89504 0.94464 0.93362 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.89 11.84 21.84 0.26 -50.63 16 2 C 0.03 1.45 5.50 85.31 0.47 1.92 16 3 Si 0.99 40.36 29.56 68.60 2.03 42.38 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 7 C -0.56 -30.98 8.67 24.83 0.22 -30.77 16 8 H 0.10 4.77 5.89 -2.91 -0.02 4.75 16 9 C 0.54 31.01 7.54 86.36 0.65 31.67 16 10 O -0.64 -43.48 14.31 -4.30 -0.06 -43.54 16 11 N -0.63 -28.13 2.25 -823.93 -1.85 -29.98 16 12 C 0.12 3.96 5.15 87.37 0.45 4.41 16 13 C -0.14 -3.91 5.74 29.39 0.17 -3.74 16 14 C -0.10 -2.48 5.15 28.61 0.15 -2.33 16 15 C -0.14 -4.31 5.27 29.76 0.16 -4.15 16 16 C 0.09 2.86 3.68 30.11 0.11 2.97 16 17 H 0.12 2.77 7.32 -2.39 -0.02 2.76 16 18 F -0.22 -7.51 17.02 44.97 0.77 -6.74 16 19 C 0.09 3.85 5.83 86.37 0.50 4.35 16 20 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 21 H 0.09 2.24 8.07 -2.39 -0.02 2.22 16 22 H 0.07 2.67 5.83 -2.39 -0.01 2.65 16 23 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.09 1.58 7.36 -2.39 -0.02 1.57 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 2.30 8.07 -2.38 -0.02 2.28 16 28 H 0.04 1.47 7.48 -2.39 -0.02 1.45 16 29 H 0.05 2.39 6.91 -2.39 -0.02 2.37 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -75.49 246.61 5.15 -70.34 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.14 Total: 13.83 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 2.87 Total: 4.33 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.59 Total: -80.61 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.06 Total: -43.54 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.77 Total: -6.74 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.38 kcal Total: -75.49 5.15 -70.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307731543.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.101 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds