Wall clock time and date at job start Mon Mar 30 2020 20:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.29990 * 2 1 4 4 S 1.83391 * 110.42944 * 237.77222 * 2 1 3 5 5 C 1.83984 * 95.85274 * 260.82537 * 4 2 1 6 6 C 1.55152 * 100.90934 * 324.65454 * 5 4 2 7 7 C 1.52933 * 108.96203 * 41.43510 * 6 5 4 8 8 H 1.09001 * 108.77895 * 90.62310 * 7 6 5 9 9 N 1.46904 * 108.88906 * 209.10686 * 7 6 5 10 10 C 1.46899 * 111.00029 * 277.98427 * 9 7 6 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00362 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99850 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47052 * 89.99717 * 16 14 12 18 18 H 1.48495 * 109.47307 * 209.99656 * 16 14 12 19 19 H 1.48500 * 109.47143 * 330.00164 * 16 14 12 20 20 H 1.08998 * 109.47665 * 297.82272 * 1 2 3 21 21 H 1.08999 * 109.47312 * 57.82827 * 1 2 3 22 22 H 1.09011 * 109.47120 * 177.82476 * 1 2 3 23 23 H 1.09001 * 111.12936 * 82.56169 * 5 4 2 24 24 H 1.08994 * 111.13184 * 206.69384 * 5 4 2 25 25 H 1.09000 * 109.59862 * 281.50220 * 6 5 4 26 26 H 1.09000 * 109.60529 * 161.37057 * 6 5 4 27 27 H 1.00902 * 111.00190 * 154.02128 * 9 7 6 28 28 H 1.09002 * 109.47043 * 299.99792 * 10 9 7 29 29 H 1.09001 * 109.47354 * 59.99854 * 10 9 7 30 30 H 1.09002 * 109.47153 * 300.00004 * 11 10 9 31 31 H 1.08998 * 109.47533 * 59.99633 * 11 10 9 32 32 H 0.96994 * 119.99814 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 16 2.1701 -0.9165 -1.4538 5 6 2.5091 -2.4844 -0.5528 6 6 2.9660 -1.9381 0.8256 7 6 2.0643 -0.7674 1.2198 8 1 1.2202 -1.1519 1.7923 9 7 2.8293 0.1581 2.0661 10 6 2.8563 -0.3035 3.4605 11 6 3.6606 0.6834 4.3090 12 6 3.6878 0.2102 5.7395 13 1 3.1822 -0.7033 6.0157 14 6 4.3588 0.9429 6.6954 15 7 4.3829 0.5297 7.9437 16 14 5.2351 2.5218 6.2172 17 1 4.2999 3.6674 6.3525 18 1 6.4040 2.7290 7.1093 19 1 5.6978 2.4243 4.8095 20 1 -0.3634 0.4796 0.9088 21 1 -0.3634 0.5472 -0.8699 22 1 -0.3634 -1.0270 -0.0390 23 1 1.6051 -3.0859 -0.4570 24 1 3.3055 -3.0507 -1.0355 25 1 3.9994 -1.5978 0.7598 26 1 2.8905 -2.7263 1.5747 27 1 2.4606 1.0952 2.0024 28 1 1.8373 -0.3652 3.8425 29 1 3.3225 -1.2876 3.5085 30 1 4.6796 0.7447 3.9268 31 1 3.1949 1.6676 4.2610 32 1 4.8548 1.0453 8.6162 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379313494.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:36 Heat of formation + Delta-G solvation = -34.463181 kcal Electronic energy + Delta-G solvation = -12493.143814 eV Core-core repulsion = 10385.226088 eV Total energy + Delta-G solvation = -2107.917725 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.15463 -35.86322 -34.21605 -32.72514 -31.25805 -27.15536 -25.14686 -24.25774 -22.15398 -21.20887 -18.98379 -17.69510 -17.05507 -16.38936 -16.22827 -15.45661 -15.08345 -14.71314 -14.48285 -14.36730 -13.68079 -13.56218 -13.26699 -13.08209 -12.91517 -12.20898 -12.10734 -12.06722 -11.80688 -11.69680 -11.63922 -11.42056 -10.80714 -10.77709 -9.40965 -8.70466 -8.30882 -6.35540 0.87160 1.34930 1.36058 1.39011 1.51632 2.36010 3.04994 3.11615 3.45040 3.87721 3.98096 4.11170 4.19059 4.32868 4.43621 4.44706 4.60348 4.71477 4.76915 4.88600 4.93429 4.95410 5.15997 5.19359 5.30944 5.46610 5.62559 6.07453 6.23394 6.45531 6.73026 7.29686 8.85733 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.053610 B = 0.005961 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.168996 B = 4696.285929 C = 4781.812651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.033 4.033 3 H 0.108 0.892 4 S -0.328 6.328 5 C -0.051 4.051 6 C -0.119 4.119 7 C 0.085 3.915 8 H 0.052 0.948 9 N -0.686 5.686 10 C 0.088 3.912 11 C -0.005 4.005 12 C -0.534 4.534 13 H 0.033 0.967 14 C 0.006 3.994 15 N -0.951 5.951 16 Si 0.952 3.048 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.248 1.248 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.104 0.896 24 H 0.119 0.881 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.345 0.655 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.022 0.978 31 H 0.019 0.981 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 -2.097 -17.965 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 H 0.126 0.874 4 S -0.102 6.102 5 C -0.199 4.199 6 C -0.158 4.158 7 C -0.026 4.026 8 H 0.070 0.930 9 N -0.318 5.318 10 C -0.041 4.041 11 C -0.043 4.043 12 C -0.572 4.572 13 H 0.051 0.949 14 C -0.191 4.191 15 N -0.591 5.591 16 Si 0.776 3.224 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.172 1.172 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.084 0.916 23 H 0.122 0.878 24 H 0.137 0.863 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.164 0.836 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.472 -2.027 -19.128 19.998 hybrid contribution -0.555 0.380 1.966 2.078 sum -6.027 -1.647 -17.161 18.263 Atomic orbital electron populations 1.22001 0.91069 1.03233 1.02974 1.23836 0.99386 1.01374 0.91637 0.87422 1.87807 1.85321 1.16451 1.20632 1.24346 1.05464 0.94847 0.95270 1.22398 1.00882 0.96631 0.95908 1.22165 0.94498 0.92853 0.93125 0.92968 1.60686 1.57185 1.05532 1.08437 1.21679 0.97531 0.98659 0.86190 1.19434 0.96479 0.95441 0.92898 1.21406 1.33179 1.09112 0.93547 0.94897 1.25985 0.96766 1.01762 0.94555 1.70061 1.44797 1.41417 1.02845 0.85625 0.78383 0.79075 0.79350 1.19045 1.21039 1.17189 0.91188 0.90867 0.91553 0.87768 0.86319 0.90617 0.90087 0.83574 0.96203 0.92428 0.95984 0.96293 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.05 71.98 0.65 -1.72 16 2 C -0.03 -0.73 3.52 30.83 0.11 -0.62 16 3 H 0.11 2.41 7.47 -2.39 -0.02 2.39 16 4 S -0.33 -7.62 22.67 -56.49 -1.28 -8.90 16 5 C -0.05 -0.97 7.52 72.72 0.55 -0.42 16 6 C -0.12 -2.79 5.58 31.31 0.17 -2.62 16 7 C 0.08 2.11 2.71 45.13 0.12 2.23 16 8 H 0.05 1.31 7.26 -2.39 -0.02 1.29 16 9 N -0.69 -21.03 6.19 -490.46 -3.03 -24.06 16 10 C 0.09 3.38 5.40 86.30 0.47 3.85 16 11 C 0.00 -0.22 4.30 29.85 0.13 -0.09 16 12 C -0.53 -30.75 9.66 25.60 0.25 -30.50 16 13 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 14 C 0.01 0.37 5.47 84.65 0.46 0.83 16 15 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 16 Si 0.95 44.43 27.47 68.60 1.88 46.32 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 20 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.08 2.05 8.04 -2.39 -0.02 2.03 16 26 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.35 9.77 7.97 -89.69 -0.72 9.05 16 28 H 0.02 0.76 8.04 -2.39 -0.02 0.75 16 29 H 0.06 2.28 7.87 -2.39 -0.02 2.26 16 30 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 31 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 32 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -64.57 270.81 1.09 -63.49 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.31 Total: 11.58 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 2.91 Total: -29.06 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.74 Total: -83.42 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -1.28 Total: -8.90 kcal Total: -64.57 1.09 -63.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379313494.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.023 kcal (2) G-P(sol) polarization free energy of solvation -64.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds