Wall clock time and date at job start Mon Mar 30 2020 20:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 S 1.81399 * 109.46810 * 180.02562 * 3 2 1 5 5 C 1.81398 * 103.00088 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.88586 * 305.69794 * 5 4 3 7 7 C 1.55160 * 111.00509 * 181.81929 * 5 4 3 8 8 C 1.54371 * 102.92007 * 206.45449 * 7 5 4 9 9 N 1.47020 * 107.29052 * 22.13505 * 8 7 5 10 10 C 1.36939 * 125.64867 * 181.12451 * 9 8 7 11 11 H 1.08000 * 119.99643 * 179.97438 * 10 9 8 12 12 C 1.38811 * 119.99990 * 359.96804 * 10 9 8 13 13 N 1.31616 * 120.00160 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99633 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47438 * 89.99697 * 14 12 10 16 16 H 1.48505 * 109.46712 * 209.99543 * 14 12 10 17 17 H 1.48496 * 109.47212 * 329.99115 * 14 12 10 18 18 C 1.47422 * 108.70017 * 1.09603 * 9 8 7 19 19 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 20 20 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 22 22 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 23 23 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 24 24 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 25 25 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 26 26 H 1.08996 * 110.72280 * 324.78688 * 7 5 4 27 27 H 1.09004 * 110.72102 * 88.06187 * 7 5 4 28 28 H 1.09005 * 109.84669 * 262.73283 * 8 7 5 29 29 H 1.08998 * 109.90297 * 141.57816 * 8 7 5 30 30 H 0.96993 * 120.00312 * 180.02562 * 13 12 10 31 31 H 1.09006 * 110.36579 * 217.02507 * 18 9 8 32 32 H 1.09001 * 110.46126 * 94.75504 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4424 -0.0008 5 6 4.2622 3.2099 -0.0015 6 1 3.7703 3.7220 -0.8284 7 6 5.7979 3.4261 -0.0482 8 6 5.9733 4.8035 0.6264 9 7 4.7840 5.0371 1.4585 10 6 4.5409 6.1581 2.2065 11 1 3.6328 6.2340 2.7861 12 6 5.4617 7.1968 2.2197 13 7 6.5687 7.1039 1.5138 14 14 5.1304 8.7256 3.2406 15 1 5.6909 8.5420 4.6034 16 1 5.7714 9.8998 2.5958 17 1 3.6656 8.9506 3.3340 18 6 3.8961 3.8649 1.3538 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6767 1.9564 0.8900 25 1 1.6768 1.9563 -0.8900 26 1 6.3139 2.6510 0.5185 27 1 6.1525 3.4526 -1.0786 28 1 6.0521 5.5806 -0.1339 29 1 6.8672 4.8001 1.2500 30 1 7.2123 7.8295 1.5233 31 1 2.8521 4.1785 1.3539 32 1 4.0830 3.1709 2.1732 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383143124.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:50 Heat of formation + Delta-G solvation = -9.022573 kcal Electronic energy + Delta-G solvation = -12485.837365 eV Core-core repulsion = 10379.022827 eV Total energy + Delta-G solvation = -2106.814538 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.04043 -35.54893 -34.58469 -31.37174 -29.69502 -28.02144 -26.60032 -22.80602 -22.16099 -21.68680 -18.97710 -17.55447 -16.76295 -16.54309 -16.19585 -15.72907 -14.56391 -14.47778 -14.27813 -14.02540 -13.82349 -13.46020 -12.99731 -12.80666 -12.67552 -12.43634 -12.19771 -12.05049 -11.87818 -11.76040 -11.65700 -11.43880 -10.82557 -10.74606 -8.96769 -8.65443 -7.88137 -5.25365 0.70959 1.45296 1.47670 1.56278 1.62712 2.48490 3.30488 3.53840 3.79466 3.90075 3.93632 3.97884 4.16783 4.41153 4.56489 4.56919 4.64820 4.70213 4.79587 4.89049 4.90248 5.12793 5.15406 5.22016 5.39919 5.40153 5.57743 5.69188 6.14327 7.05496 7.71177 8.36315 9.22393 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.050462 B = 0.006642 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.734784 B = 4214.682443 C = 4685.358713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.082 4.082 4 S -0.268 6.268 5 C -0.056 4.056 6 H 0.090 0.910 7 C -0.106 4.106 8 C 0.188 3.812 9 N -0.626 5.626 10 C -0.249 4.249 11 H 0.083 0.917 12 C -0.064 4.064 13 N -0.951 5.951 14 Si 0.982 3.018 15 H -0.285 1.285 16 H -0.292 1.292 17 H -0.268 1.268 18 C 0.145 3.855 19 H 0.060 0.940 20 H 0.072 0.928 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.018 0.982 29 H 0.012 0.988 30 H 0.249 0.751 31 H 0.043 0.957 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.506 -12.073 -4.091 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C -0.230 4.230 4 S -0.038 6.038 5 C -0.186 4.186 6 H 0.109 0.891 7 C -0.145 4.145 8 C 0.062 3.938 9 N -0.353 5.353 10 C -0.377 4.377 11 H 0.101 0.899 12 C -0.257 4.257 13 N -0.600 5.600 14 Si 0.810 3.190 15 H -0.212 1.212 16 H -0.219 1.219 17 H -0.192 1.192 18 C 0.018 3.982 19 H 0.079 0.921 20 H 0.091 0.909 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.036 0.964 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.728 -12.771 -4.066 15.994 hybrid contribution -0.485 2.161 0.539 2.279 sum -9.214 -10.610 -3.527 14.488 Atomic orbital electron populations 1.21749 0.93344 1.02854 1.02350 1.21262 0.97044 0.92679 1.03156 1.23523 0.91580 1.02639 1.05234 1.86544 1.09846 1.09533 1.97892 1.24216 1.00378 0.93426 1.00539 0.89131 1.22602 0.92637 0.97477 1.01768 1.20940 0.88891 0.91815 0.92166 1.44796 1.20226 1.16205 1.54109 1.19476 1.04028 0.93553 1.20678 0.89885 1.25693 0.96646 1.01732 1.01609 1.70172 1.11126 1.33284 1.45409 0.85029 0.77881 0.78392 0.77715 1.21202 1.21872 1.19234 1.21970 0.93930 0.88488 0.93797 0.92106 0.90949 0.92495 0.90911 0.91383 0.90289 0.89588 0.91003 0.89237 0.96352 0.96995 0.94215 0.93879 0.95246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.91 71.98 0.71 -1.35 16 2 C -0.10 -1.88 5.94 30.60 0.18 -1.70 16 3 C -0.08 -1.89 5.90 71.98 0.42 -1.47 16 4 S -0.27 -7.99 21.18 -56.49 -1.20 -9.19 16 5 C -0.06 -2.01 3.55 31.99 0.11 -1.90 16 6 H 0.09 3.21 8.14 -2.39 -0.02 3.20 16 7 C -0.11 -4.10 6.44 31.80 0.20 -3.89 16 8 C 0.19 9.60 5.37 86.75 0.47 10.06 16 9 N -0.63 -33.23 3.39 -691.90 -2.35 -35.58 16 10 C -0.25 -14.20 10.28 84.03 0.86 -13.34 16 11 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 12 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 13 N -0.95 -57.89 10.31 21.65 0.22 -57.67 16 14 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 15 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 C 0.15 6.17 6.68 86.85 0.58 6.75 16 19 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 20 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 24 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 27 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 28 H 0.02 1.03 7.38 -2.38 -0.02 1.01 16 29 H 0.01 0.68 7.51 -2.39 -0.02 0.66 16 30 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.03 1.28 8.03 -2.39 -0.02 1.26 16 Total: -1.00 -64.07 273.82 3.78 -60.29 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.06 Total: 4.16 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 4.01 Total: -10.04 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -2.13 Total: -93.25 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.20 Total: -9.19 kcal Total: -64.07 3.78 -60.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383143124.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.272 kcal (2) G-P(sol) polarization free energy of solvation -64.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds