Wall clock time and date at job start Mon Mar 30 2020 20:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00317 * 2 1 4 4 H 1.48502 * 109.47058 * 270.00312 * 3 2 1 5 5 H 1.48500 * 109.46816 * 30.00459 * 3 2 1 6 6 H 1.48505 * 109.46870 * 150.00513 * 3 2 1 7 7 C 1.37882 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00455 * 173.59136 * 7 2 1 9 9 C 1.50709 * 120.00029 * 353.59190 * 7 2 1 10 10 C 1.52999 * 115.55120 * 85.44153 * 9 7 2 11 11 N 1.46903 * 109.46753 * 65.05283 * 10 9 7 12 12 C 1.46899 * 111.00157 * 185.34928 * 11 10 9 13 13 C 1.53000 * 109.47535 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.46933 * 59.99417 * 13 12 11 15 15 O 1.42908 * 109.46791 * 299.99953 * 13 12 11 16 16 C 1.52992 * 109.47379 * 180.02562 * 13 12 11 17 17 O 1.42901 * 109.47415 * 185.00023 * 16 13 12 18 18 C 1.52990 * 117.49771 * 231.11869 * 9 7 2 19 19 C 1.53006 * 117.49557 * 299.77829 * 9 7 2 20 20 H 0.97002 * 119.99563 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47276 * 305.05958 * 10 9 7 22 22 H 1.08997 * 109.47257 * 185.04684 * 10 9 7 23 23 H 1.00901 * 111.00139 * 61.39198 * 11 10 9 24 24 H 1.09005 * 109.46785 * 59.99893 * 12 11 10 25 25 H 1.08996 * 109.47043 * 300.00408 * 12 11 10 26 26 H 0.96695 * 114.00022 * 299.99793 * 15 13 12 27 27 H 1.09002 * 109.47313 * 304.99976 * 16 13 12 28 28 H 1.09007 * 109.47232 * 64.99670 * 16 13 12 29 29 H 0.96692 * 113.99991 * 180.02562 * 17 16 13 30 30 H 1.09002 * 117.49648 * 214.99881 * 18 9 7 31 31 H 1.09005 * 117.50534 * 0.02562 * 18 9 7 32 32 H 1.09003 * 117.49876 * 359.97438 * 19 9 7 33 33 H 1.08998 * 117.49715 * 144.97444 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1971 -0.1049 9 6 1.2580 -2.4953 0.1446 10 6 0.7035 -3.0861 -1.1532 11 7 1.8166 -3.4574 -2.0370 12 6 1.3224 -3.9111 -3.3439 13 6 2.5078 -4.2887 -4.2344 14 1 3.0759 -5.0904 -3.7625 15 8 3.3511 -3.1490 -4.4135 16 6 1.9931 -4.7606 -5.5957 17 8 3.0905 -5.2228 -6.3858 18 6 1.7457 -3.4739 1.2147 19 6 0.4401 -2.7018 1.4210 20 1 -0.4849 0.8401 0.0004 21 1 0.0761 -2.3463 -1.6504 22 1 0.1100 -3.9714 -0.9249 23 1 2.4006 -4.1594 -1.6077 24 1 0.7540 -3.1095 -3.8156 25 1 0.6795 -4.7806 -3.2073 26 1 2.9106 -2.3953 -4.8293 27 1 1.2805 -5.5730 -5.4531 28 1 1.5018 -3.9318 -6.1056 29 1 2.8375 -5.5376 -7.2644 30 1 1.6714 -4.5388 0.9941 31 1 2.6061 -3.1766 1.8141 32 1 0.4422 -1.8969 2.1560 33 1 -0.4932 -3.2584 1.3361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085248658.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:18 Heat of formation + Delta-G solvation = -104.434815 kcal Electronic energy + Delta-G solvation = -14682.246794 eV Core-core repulsion = 12128.542000 eV Total energy + Delta-G solvation = -2553.704794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.44837 -38.53057 -36.83012 -35.28694 -33.87815 -31.05328 -27.84246 -26.84856 -24.27993 -22.88877 -22.50906 -20.85430 -18.45298 -18.01887 -17.50553 -17.02610 -16.59082 -16.06163 -15.62050 -15.17599 -15.02776 -14.49331 -14.11508 -13.77398 -13.40850 -13.13932 -12.86070 -12.81338 -12.56834 -12.32546 -12.01430 -11.73592 -11.40277 -11.02540 -10.80792 -10.72422 -10.35028 -9.91060 -9.01440 -8.03132 -6.08552 1.43114 1.44497 1.54078 2.48929 2.90751 3.26839 3.50772 3.63845 3.78520 4.05098 4.20487 4.31245 4.35693 4.49872 4.53508 4.59863 4.70830 4.74455 4.80695 4.99502 5.07786 5.13640 5.28554 5.64669 5.75658 5.88970 6.35204 6.51572 6.70568 6.90318 6.94213 6.95879 7.56371 9.05970 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.029911 B = 0.007817 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.870185 B = 3581.132645 C = 4154.352835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.479 4.479 8 H 0.044 0.956 9 C 0.022 3.978 10 C 0.124 3.876 11 N -0.675 5.675 12 C 0.036 3.964 13 C 0.113 3.887 14 H 0.089 0.911 15 O -0.565 6.565 16 C 0.051 3.949 17 O -0.588 6.588 18 C -0.190 4.190 19 C -0.164 4.164 20 H 0.256 0.744 21 H 0.044 0.956 22 H 0.009 0.991 23 H 0.336 0.664 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.380 0.620 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.397 0.603 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 -9.445 -9.771 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.770 3.230 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.005 4.005 11 N -0.306 5.306 12 C -0.094 4.094 13 C 0.053 3.947 14 H 0.107 0.893 15 O -0.371 6.371 16 C -0.027 4.027 17 O -0.396 6.396 18 C -0.227 4.227 19 C -0.202 4.202 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.027 0.973 23 H 0.154 0.846 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.228 0.772 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.247 0.753 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.814 -8.897 -9.178 12.809 hybrid contribution -0.942 0.445 -0.281 1.079 sum -0.127 -8.453 -9.459 12.686 Atomic orbital electron populations 1.70104 1.06777 1.26592 1.51693 1.25550 0.95509 1.01459 0.95108 0.85788 0.78793 0.80413 0.77959 1.20538 1.21066 1.19880 1.20527 0.92391 0.90202 1.48605 0.93819 1.18966 0.98198 0.93954 0.86723 1.21193 0.90828 0.95308 0.93168 1.59999 1.21160 1.46100 1.03307 1.22530 0.96296 0.99321 0.91245 1.21885 0.91077 0.88404 0.93298 0.89256 1.86584 1.40899 1.25261 1.84364 1.22835 0.88774 0.99424 0.91677 1.86501 1.35431 1.85582 1.32127 1.22980 0.97192 0.96510 1.06041 1.22439 0.93420 1.01247 1.03142 0.93492 0.93790 0.97307 0.84641 0.91260 0.93529 0.77171 0.90829 0.91884 0.75343 0.89182 0.90824 0.92494 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.71 12.92 21.45 0.28 -52.44 16 2 C 0.02 1.26 5.39 84.66 0.46 1.72 16 3 Si 0.94 44.98 29.54 68.60 2.03 47.01 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.48 -26.79 8.74 25.60 0.22 -26.57 16 8 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 9 C 0.02 1.09 1.55 -52.93 -0.08 1.01 16 10 C 0.12 5.45 5.51 86.30 0.48 5.93 16 11 N -0.67 -25.94 6.24 -513.88 -3.21 -29.14 16 12 C 0.04 1.05 5.34 86.30 0.46 1.51 16 13 C 0.11 3.06 3.46 30.59 0.11 3.17 16 14 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 15 O -0.57 -18.54 13.17 -144.32 -1.90 -20.44 16 16 C 0.05 1.01 6.68 71.98 0.48 1.49 16 17 O -0.59 -12.59 13.62 -144.32 -1.97 -14.55 16 18 C -0.19 -8.10 9.96 30.62 0.30 -7.79 16 19 C -0.16 -7.74 9.41 30.62 0.29 -7.45 16 20 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 21 H 0.04 2.19 8.13 -2.39 -0.02 2.17 16 22 H 0.01 0.36 8.09 -2.39 -0.02 0.34 16 23 H 0.34 12.26 8.79 -89.69 -0.79 11.48 16 24 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.38 10.37 9.04 -74.06 -0.67 9.70 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.40 4.22 9.12 -74.06 -0.68 3.55 16 30 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 32 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -67.07 285.43 -3.08 -70.14 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -1.02 Total: 26.41 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 2.71 Total: -26.99 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -2.93 Total: -81.58 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -3.87 Total: -35.00 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -67.07 -3.08 -70.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085248658.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.291 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds