Wall clock time and date at job start Mon Mar 30 2020 20:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47251 * 2 1 4 4 C 1.50697 * 109.47173 * 239.99992 * 2 1 3 5 5 H 1.08004 * 119.99738 * 240.00183 * 4 2 1 6 6 C 1.37874 * 120.00096 * 59.99656 * 4 2 1 7 7 N 1.31511 * 120.00283 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99905 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47366 * 90.00044 * 8 6 4 10 10 H 1.48500 * 109.47144 * 210.00293 * 8 6 4 11 11 H 1.48502 * 109.47174 * 329.99807 * 8 6 4 12 12 N 1.46895 * 109.47239 * 119.99829 * 2 1 3 13 13 C 1.46901 * 111.00073 * 206.04486 * 12 2 1 14 14 H 1.08999 * 109.38959 * 326.30260 * 13 12 2 15 15 C 1.52580 * 109.38924 * 206.50131 * 13 12 2 16 16 C 1.52583 * 110.72700 * 169.17447 * 15 13 12 17 17 C 1.53094 * 109.95710 * 70.67528 * 16 15 13 18 18 S 1.81751 * 108.84205 * 296.97565 * 17 16 15 19 19 C 1.53100 * 109.39127 * 86.10357 * 13 12 2 20 20 H 1.09001 * 109.46716 * 294.01289 * 1 2 3 21 21 H 1.08991 * 109.47036 * 174.00893 * 1 2 3 22 22 H 1.09003 * 109.47136 * 54.00297 * 1 2 3 23 23 H 0.97002 * 120.00364 * 179.97438 * 7 6 4 24 24 H 1.00900 * 110.99814 * 329.99495 * 12 2 1 25 25 H 1.08999 * 109.22781 * 289.49155 * 15 13 12 26 26 H 1.09000 * 109.23128 * 48.89602 * 15 13 12 27 27 H 1.09004 * 109.39054 * 190.82617 * 16 15 13 28 28 H 1.08994 * 109.38888 * 310.52381 * 16 15 13 29 29 H 1.08997 * 109.57545 * 56.78189 * 17 16 15 30 30 H 1.09002 * 109.58140 * 177.03976 * 17 16 15 31 31 H 1.08998 * 109.57683 * 302.97669 * 19 13 12 32 32 H 1.09001 * 109.57687 * 63.36798 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3428 -2.1619 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0197 -0.6924 1.1994 13 6 3.3569 -0.2137 1.5746 14 1 3.9159 0.0410 0.6742 15 6 4.0936 -1.3129 2.3343 16 6 5.5672 -0.9560 2.5061 17 6 5.7132 0.1943 3.5057 18 16 4.8834 1.6650 2.8334 19 6 3.2224 1.0294 2.4581 20 1 -0.3633 0.4182 0.9388 21 1 -0.3633 -1.0220 -0.1073 22 1 -0.3633 0.6040 -0.8315 23 1 0.7094 1.1617 -3.4845 24 1 1.3711 -0.5909 1.9657 25 1 3.6378 -1.4378 3.3165 26 1 4.0137 -2.2480 1.7800 27 1 6.1098 -1.8267 2.8744 28 1 5.9809 -0.6541 1.5440 29 1 5.2517 -0.0843 4.4530 30 1 6.7701 0.4092 3.6635 31 1 2.6513 1.7928 1.9298 32 1 2.7130 0.7654 3.3849 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129198504.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:46 Heat of formation + Delta-G solvation = -16.323164 kcal Electronic energy + Delta-G solvation = -12960.327725 eV Core-core repulsion = 10853.196610 eV Total energy + Delta-G solvation = -2107.131115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.58254 -34.68857 -32.43974 -30.20820 -27.11028 -26.71454 -25.13891 -22.20325 -20.27898 -19.96245 -16.49063 -16.12373 -15.15754 -14.82049 -14.36777 -13.83876 -13.51747 -13.08498 -13.02580 -12.81949 -12.45855 -11.48002 -11.12151 -11.04717 -10.99478 -10.85595 -10.65637 -10.42169 -10.26124 -10.01226 -9.72103 -9.63405 -9.11634 -8.39826 -7.63604 -7.15328 -5.97566 -4.00643 2.00091 2.75645 3.33125 3.39420 3.43314 4.44903 4.85971 4.93626 5.11940 5.23675 5.32580 5.39158 5.44380 5.65942 5.81069 5.89284 6.00906 6.22369 6.28359 6.56192 6.63695 6.74099 6.95279 7.01747 7.42886 7.71404 7.91287 8.23113 8.33623 8.70388 9.06191 9.64412 11.09413 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036542 B = 0.008454 C = 0.007926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.051404 B = 3311.171637 C = 3531.794559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.210 3.790 3 H 0.004 0.996 4 C -0.493 4.493 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.675 5.675 13 C 0.095 3.905 14 H 0.095 0.905 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.079 4.079 18 S -0.278 6.278 19 C -0.102 4.102 20 H 0.005 0.995 21 H 0.036 0.964 22 H 0.085 0.915 23 H 0.259 0.741 24 H 0.316 0.684 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.055 -1.492 10.374 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.103 3.897 3 H 0.021 0.979 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.305 5.305 13 C -0.017 4.017 14 H 0.113 0.887 15 C -0.154 4.154 16 C -0.160 4.160 17 C -0.227 4.227 18 S -0.053 6.053 19 C -0.252 4.252 20 H 0.024 0.976 21 H 0.055 0.945 22 H 0.104 0.896 23 H 0.069 0.931 24 H 0.133 0.867 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.603 -0.881 9.718 11.783 hybrid contribution -0.501 -0.640 -0.298 0.866 sum 6.102 -1.522 9.420 11.326 Atomic orbital electron populations 1.21950 0.98247 1.00660 0.99071 1.19212 0.91475 0.92223 0.86805 0.97859 1.21148 1.30499 1.12011 0.89536 0.92068 1.24955 0.95405 0.95130 0.99048 1.69889 1.37371 1.23129 1.23333 0.86536 0.79223 0.79276 0.82582 1.20791 1.21402 1.19949 1.60864 1.01698 1.60445 1.07451 1.21718 0.93401 0.89618 0.96961 0.88735 1.21519 0.93392 1.00301 1.00139 1.21743 0.97867 0.96958 0.99461 1.23414 1.02722 0.95810 1.00741 1.86750 1.14762 1.20239 1.83572 1.24434 0.94596 1.03136 1.03034 0.97649 0.94453 0.89618 0.93086 0.86740 0.92865 0.90168 0.91287 0.90491 0.90380 0.88377 0.88011 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.92 37.16 0.33 -3.03 16 2 C 0.21 5.18 2.40 -68.87 -0.17 5.02 16 3 H 0.00 0.10 7.19 -51.93 -0.37 -0.27 16 4 C -0.49 -13.56 8.55 -34.44 -0.29 -13.86 16 5 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.73 11.39 55.43 0.63 -25.09 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.68 -13.84 6.04 -101.13 -0.61 -14.45 16 13 C 0.10 1.72 2.12 -67.88 -0.14 1.58 16 14 H 0.09 2.02 7.57 -51.93 -0.39 1.63 16 15 C -0.12 -1.74 5.21 -27.16 -0.14 -1.88 16 16 C -0.12 -1.56 5.75 -26.90 -0.15 -1.71 16 17 C -0.08 -0.96 6.45 37.21 0.24 -0.72 16 18 S -0.28 -4.31 22.33 -107.50 -2.40 -6.71 16 19 C -0.10 -1.67 5.68 37.21 0.21 -1.46 16 20 H 0.00 0.10 8.00 -51.93 -0.42 -0.32 16 21 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.09 2.25 6.26 -51.93 -0.32 1.93 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.32 5.88 7.98 -39.29 -0.31 5.56 16 25 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.08 8.06 -51.93 -0.42 0.67 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 1.84 7.50 -51.93 -0.39 1.45 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 266.60 15.07 4.02 4.02 Total: -1.00 -28.10 266.60 -8.72 -36.83 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.13 Total: 3.44 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -0.21 Total: -14.62 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.02 Total: -39.55 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -2.40 Total: -6.71 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.10 -8.72 -36.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129198504.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.506 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds