Wall clock time and date at job start Mon Mar 30 2020 20:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00100 * 2 1 4 4 H 1.48511 * 109.46621 * 275.68600 * 3 2 1 5 5 H 1.48501 * 109.47080 * 35.68315 * 3 2 1 6 6 H 1.48499 * 109.47227 * 155.68830 * 3 2 1 7 7 C 1.38817 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99927 * 342.62552 * 7 2 1 9 9 N 1.36939 * 119.99959 * 162.63505 * 7 2 1 10 10 C 1.46929 * 120.62955 * 123.28957 * 9 7 2 11 11 H 1.08998 * 109.69855 * 246.24428 * 10 9 7 12 12 C 1.52997 * 109.58742 * 6.59824 * 10 9 7 13 13 O 1.42902 * 109.47038 * 65.33651 * 12 10 9 14 14 C 1.53186 * 108.77323 * 126.38923 * 10 9 7 15 15 C 1.53034 * 109.31616 * 54.63115 * 14 10 9 16 16 C 1.53041 * 109.53925 * 298.63423 * 15 14 10 17 17 C 1.46924 * 120.63019 * 303.28430 * 9 7 2 18 18 H 1.08996 * 109.70515 * 113.75587 * 17 9 7 19 19 C 1.53007 * 109.58765 * 353.40008 * 17 9 7 20 20 O 1.42905 * 109.46930 * 296.50466 * 19 17 9 21 21 H 0.97004 * 119.99763 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.46883 * 185.33727 * 12 10 9 23 23 H 1.09007 * 109.47437 * 305.33558 * 12 10 9 24 24 H 0.96699 * 113.99878 * 184.95739 * 13 12 10 25 25 H 1.09000 * 109.49947 * 294.67653 * 14 10 9 26 26 H 1.09005 * 109.52064 * 174.60402 * 14 10 9 27 27 H 1.09004 * 109.46346 * 178.60849 * 15 14 10 28 28 H 1.09009 * 109.45961 * 58.65799 * 15 14 10 29 29 H 1.08994 * 109.49710 * 301.41088 * 16 15 14 30 30 H 1.08998 * 109.49400 * 181.31251 * 16 15 14 31 31 H 1.08996 * 109.46945 * 176.50498 * 19 17 9 32 32 H 1.08994 * 109.46898 * 56.50012 * 19 17 9 33 33 H 0.96700 * 113.99890 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3775 2.1157 -1.3933 5 1 1.5128 2.6151 0.8167 6 1 3.6026 1.4085 0.5764 7 6 2.0102 -1.2022 -0.0005 8 1 1.5072 -2.1163 0.2784 9 7 3.3328 -1.2290 -0.3545 10 6 4.3427 -1.7725 0.5640 11 1 5.0087 -0.9744 0.8917 12 6 3.6500 -2.3936 1.7786 13 8 2.8818 -3.5244 1.3622 14 6 5.1508 -2.8463 -0.1712 15 6 5.7267 -2.2532 -1.4591 16 6 4.5834 -1.8008 -2.3703 17 6 3.7689 -0.7150 -1.6600 18 1 4.3871 0.1714 -1.5181 19 6 2.5448 -0.3568 -2.5052 20 8 1.7842 -1.5380 -2.7665 21 1 -0.4850 0.8401 -0.0004 22 1 4.4008 -2.7110 2.5021 23 1 2.9915 -1.6563 2.2379 24 1 2.3546 -3.9231 2.0680 25 1 4.5010 -3.6864 -0.4164 26 1 5.9648 -3.1902 0.4669 27 1 6.3227 -3.0082 -1.9718 28 1 6.3568 -1.3978 -1.2149 29 1 3.9390 -2.6507 -2.5948 30 1 4.9938 -1.3999 -3.2970 31 1 2.8703 0.0819 -3.4484 32 1 1.9275 0.3606 -1.9646 33 1 0.9913 -1.3855 -3.2986 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150233900.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:54 Heat of formation + Delta-G solvation = -71.382524 kcal Electronic energy + Delta-G solvation = -16218.025561 eV Core-core repulsion = 13665.754022 eV Total energy + Delta-G solvation = -2552.271539 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.45268 -36.01791 -34.75085 -32.92222 -31.01185 -30.67607 -26.51900 -24.97285 -24.11241 -20.85800 -20.11581 -19.14970 -16.64375 -16.49454 -16.25223 -15.05266 -14.44404 -13.83931 -13.80062 -13.17302 -13.03776 -12.79513 -12.55379 -12.37964 -11.68341 -11.51846 -11.02070 -10.78673 -10.60154 -10.45749 -10.34632 -9.94602 -9.76545 -9.44887 -9.20693 -9.01107 -8.67032 -8.22177 -6.24657 -5.82486 -3.41813 3.31234 3.47393 3.55071 4.57595 4.98146 5.20892 5.32847 5.43071 5.60222 5.64413 5.70300 6.05348 6.09622 6.13700 6.20277 6.24893 6.35225 6.51991 6.54240 6.62719 6.67661 6.82250 6.83488 6.99636 7.10244 7.34122 8.26842 8.50727 8.74273 8.88480 9.21550 9.85324 10.41550 11.29291 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.017379 C = 0.014147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.917364 B = 1610.781850 C = 1978.766274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.041 3.959 3 Si 0.859 3.141 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.226 4.226 8 H 0.083 0.917 9 N -0.588 5.588 10 C 0.171 3.829 11 H 0.034 0.966 12 C 0.094 3.906 13 O -0.550 6.550 14 C -0.125 4.125 15 C -0.112 4.112 16 C -0.125 4.125 17 C 0.167 3.833 18 H 0.030 0.970 19 C 0.080 3.920 20 O -0.536 6.536 21 H 0.258 0.742 22 H 0.024 0.976 23 H 0.056 0.944 24 H 0.361 0.639 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.016 0.984 32 H 0.064 0.936 33 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.861 -2.196 -1.030 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.158 4.158 3 Si 0.688 3.312 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.355 4.355 8 H 0.101 0.899 9 N -0.314 5.314 10 C 0.065 3.935 11 H 0.051 0.949 12 C 0.015 3.985 13 O -0.353 6.353 14 C -0.164 4.164 15 C -0.149 4.149 16 C -0.164 4.164 17 C 0.062 3.938 18 H 0.047 0.953 19 C 0.002 3.998 20 O -0.338 6.338 21 H 0.068 0.932 22 H 0.042 0.958 23 H 0.074 0.926 24 H 0.205 0.795 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.471 -2.231 -1.230 8.846 hybrid contribution -0.167 1.398 0.140 1.415 sum 8.304 -0.833 -1.090 8.417 Atomic orbital electron populations 1.69863 1.05840 1.25934 1.53010 1.25961 0.94994 0.97241 0.97562 0.87334 0.81089 0.85623 0.77144 1.21402 1.22928 1.19345 1.18705 0.83387 0.93139 1.40293 0.89937 1.44171 1.03947 1.72516 1.10756 1.20685 0.90352 0.92603 0.89847 0.94882 1.22057 0.92989 0.88201 0.95211 1.86633 1.63174 1.46207 1.39259 1.21898 0.98478 0.99989 0.96051 1.21427 0.97347 0.99303 0.96842 1.21905 0.96951 1.00894 0.96629 1.20762 0.92646 0.93761 0.86671 0.95293 1.22365 0.93446 0.88718 0.95236 1.86608 1.39759 1.31797 1.75602 0.93223 0.95788 0.92575 0.79495 0.90872 0.93750 0.93455 0.93345 0.90744 0.93864 0.96585 0.91826 0.79880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.97 55.49 0.78 -26.17 16 2 C 0.04 1.16 3.97 -17.43 -0.07 1.09 16 3 Si 0.86 21.88 24.55 -169.99 -4.17 17.71 16 4 H -0.29 -7.07 6.61 56.52 0.37 -6.70 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 6 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.23 -6.20 6.14 -15.06 -0.09 -6.30 16 8 H 0.08 2.56 6.57 -52.49 -0.34 2.21 16 9 N -0.59 -14.27 2.16 -157.29 -0.34 -14.61 16 10 C 0.17 3.62 3.30 -67.60 -0.22 3.39 16 11 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 12 C 0.09 1.84 6.07 37.16 0.23 2.06 16 13 O -0.55 -11.12 10.85 -35.23 -0.38 -11.50 16 14 C -0.13 -2.35 5.25 -26.62 -0.14 -2.49 16 15 C -0.11 -1.96 5.88 -26.69 -0.16 -2.12 16 16 C -0.12 -2.45 5.27 -26.61 -0.14 -2.59 16 17 C 0.17 3.77 2.10 -67.60 -0.14 3.62 16 18 H 0.03 0.66 7.47 -51.93 -0.39 0.27 16 19 C 0.08 1.83 5.60 37.16 0.21 2.03 16 20 O -0.54 -12.37 11.59 -35.23 -0.41 -12.77 16 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 1.20 7.42 -51.92 -0.39 0.81 16 24 H 0.36 5.63 9.12 45.56 0.42 6.05 16 25 H 0.07 1.53 7.36 -51.93 -0.38 1.15 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.07 1.61 7.41 -51.93 -0.38 1.23 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 1.61 2.93 -51.93 -0.15 1.46 16 33 H 0.36 6.88 9.12 45.56 0.42 7.29 16 LS Contribution 250.24 15.07 3.77 3.77 Total: -1.00 -31.80 250.24 -4.62 -36.41 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.33 Total: 8.45 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.53 Total: -1.30 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.44 Total: -40.77 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.79 Total: -24.27 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.17 Total: 17.71 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.80 -4.62 -36.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150233900.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.969 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds