Wall clock time and date at job start Mon Mar 30 2020 20:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00100 * 2 1 4 4 H 1.48511 * 109.46621 * 275.68600 * 3 2 1 5 5 H 1.48501 * 109.47080 * 35.68315 * 3 2 1 6 6 H 1.48499 * 109.47227 * 155.68830 * 3 2 1 7 7 C 1.38817 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99927 * 342.62552 * 7 2 1 9 9 N 1.36939 * 119.99959 * 162.63505 * 7 2 1 10 10 C 1.46929 * 120.62955 * 123.28957 * 9 7 2 11 11 H 1.08998 * 109.69855 * 246.24428 * 10 9 7 12 12 C 1.52997 * 109.58742 * 6.59824 * 10 9 7 13 13 O 1.42902 * 109.47038 * 65.33651 * 12 10 9 14 14 C 1.53186 * 108.77323 * 126.38923 * 10 9 7 15 15 C 1.53034 * 109.31616 * 54.63115 * 14 10 9 16 16 C 1.53041 * 109.53925 * 298.63423 * 15 14 10 17 17 C 1.46924 * 120.63019 * 303.28430 * 9 7 2 18 18 H 1.08996 * 109.70515 * 113.75587 * 17 9 7 19 19 C 1.53007 * 109.58765 * 353.40008 * 17 9 7 20 20 O 1.42905 * 109.46930 * 296.50466 * 19 17 9 21 21 H 0.97004 * 119.99763 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.46883 * 185.33727 * 12 10 9 23 23 H 1.09007 * 109.47437 * 305.33558 * 12 10 9 24 24 H 0.96699 * 113.99878 * 184.95739 * 13 12 10 25 25 H 1.09000 * 109.49947 * 294.67653 * 14 10 9 26 26 H 1.09005 * 109.52064 * 174.60402 * 14 10 9 27 27 H 1.09004 * 109.46346 * 178.60849 * 15 14 10 28 28 H 1.09009 * 109.45961 * 58.65799 * 15 14 10 29 29 H 1.08994 * 109.49710 * 301.41088 * 16 15 14 30 30 H 1.08998 * 109.49400 * 181.31251 * 16 15 14 31 31 H 1.08996 * 109.46945 * 176.50498 * 19 17 9 32 32 H 1.08994 * 109.46898 * 56.50012 * 19 17 9 33 33 H 0.96700 * 113.99890 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3775 2.1157 -1.3933 5 1 1.5128 2.6151 0.8167 6 1 3.6026 1.4085 0.5764 7 6 2.0102 -1.2022 -0.0005 8 1 1.5072 -2.1163 0.2784 9 7 3.3328 -1.2290 -0.3545 10 6 4.3427 -1.7725 0.5640 11 1 5.0087 -0.9744 0.8917 12 6 3.6500 -2.3936 1.7786 13 8 2.8818 -3.5244 1.3622 14 6 5.1508 -2.8463 -0.1712 15 6 5.7267 -2.2532 -1.4591 16 6 4.5834 -1.8008 -2.3703 17 6 3.7689 -0.7150 -1.6600 18 1 4.3871 0.1714 -1.5181 19 6 2.5448 -0.3568 -2.5052 20 8 1.7842 -1.5380 -2.7665 21 1 -0.4850 0.8401 -0.0004 22 1 4.4008 -2.7110 2.5021 23 1 2.9915 -1.6563 2.2379 24 1 2.3546 -3.9231 2.0680 25 1 4.5010 -3.6864 -0.4164 26 1 5.9648 -3.1902 0.4669 27 1 6.3227 -3.0082 -1.9718 28 1 6.3568 -1.3978 -1.2149 29 1 3.9390 -2.6507 -2.5948 30 1 4.9938 -1.3999 -3.2970 31 1 2.8703 0.0819 -3.4484 32 1 1.9275 0.3606 -1.9646 33 1 0.9913 -1.3855 -3.2986 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150233900.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:54 Heat of formation + Delta-G solvation = -98.212903 kcal Electronic energy + Delta-G solvation = -16219.189014 eV Core-core repulsion = 13665.754022 eV Total energy + Delta-G solvation = -2553.434992 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.13670 -37.68061 -36.40326 -34.84771 -32.70402 -32.53286 -28.27795 -26.57907 -26.01706 -22.49368 -21.77843 -20.91219 -18.48281 -18.28936 -17.94877 -16.86082 -16.26654 -15.60276 -15.41782 -14.83211 -14.67924 -14.56884 -14.30156 -14.21701 -13.28358 -13.19962 -12.83497 -12.60666 -12.51029 -12.04166 -12.01074 -11.74341 -11.47651 -11.09697 -10.88814 -10.61363 -10.53499 -10.23879 -8.20396 -7.94699 -5.56279 1.29738 1.41315 1.51783 2.49113 3.16059 3.37493 3.71445 3.74930 4.09877 4.14711 4.19615 4.46697 4.51293 4.57101 4.60482 4.66692 4.79296 4.89984 5.04521 5.10412 5.14857 5.19590 5.33233 5.40973 5.51502 5.78268 6.16966 6.69297 7.08573 7.13657 7.27312 7.77220 8.36944 9.17392 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.017379 C = 0.014147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.917364 B = 1610.781850 C = 1978.766274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.000 4.000 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.312 1.312 6 H -0.262 1.262 7 C -0.201 4.201 8 H 0.038 0.962 9 N -0.601 5.601 10 C 0.155 3.845 11 H 0.044 0.956 12 C 0.095 3.905 13 O -0.572 6.572 14 C -0.116 4.116 15 C -0.109 4.109 16 C -0.117 4.117 17 C 0.155 3.845 18 H 0.037 0.963 19 C 0.076 3.924 20 O -0.555 6.555 21 H 0.255 0.745 22 H 0.065 0.935 23 H 0.029 0.971 24 H 0.378 0.622 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.534 -1.975 -1.499 10.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.742 3.258 4 H -0.200 1.200 5 H -0.240 1.240 6 H -0.187 1.187 7 C -0.332 4.332 8 H 0.055 0.945 9 N -0.328 5.328 10 C 0.050 3.950 11 H 0.062 0.938 12 C 0.017 3.983 13 O -0.377 6.377 14 C -0.155 4.155 15 C -0.146 4.146 16 C -0.156 4.156 17 C 0.050 3.950 18 H 0.055 0.945 19 C -0.002 4.002 20 O -0.359 6.359 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.047 0.953 24 H 0.225 0.775 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 11.175 -2.023 -1.705 11.484 hybrid contribution -1.008 1.226 0.282 1.612 sum 10.167 -0.796 -1.424 10.297 Atomic orbital electron populations 1.69988 1.07415 1.26370 1.55694 1.26334 0.95281 0.99887 0.98021 0.86432 0.79834 0.81964 0.77536 1.19971 1.24042 1.18674 1.18277 0.84774 0.91398 1.38764 0.94493 1.44321 1.03312 1.72899 1.12263 1.20996 0.90209 0.93630 0.90134 0.93810 1.22064 0.93312 0.87533 0.95410 1.86580 1.63826 1.46378 1.40940 1.21781 0.98499 0.98123 0.97105 1.21441 0.96789 1.00584 0.95815 1.21794 0.96926 0.98897 0.97980 1.20969 0.93044 0.94964 0.86060 0.94514 1.22426 0.93202 0.87981 0.96585 1.86564 1.40706 1.32507 1.76142 0.93542 0.91741 0.95280 0.77531 0.93589 0.90687 0.90846 0.91722 0.93423 0.91219 0.93344 0.94569 0.78344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.17 13.97 21.65 0.30 -57.86 16 2 C 0.00 -0.01 3.97 84.86 0.34 0.33 16 3 Si 0.91 45.19 24.55 68.60 1.68 46.87 16 4 H -0.27 -12.78 6.61 99.48 0.66 -12.12 16 5 H -0.31 -15.80 7.11 99.48 0.71 -15.10 16 6 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.20 -11.23 6.14 84.03 0.52 -10.72 16 8 H 0.04 2.40 6.57 -2.91 -0.02 2.38 16 9 N -0.60 -28.57 2.16 -651.55 -1.41 -29.97 16 10 C 0.16 6.24 3.30 44.97 0.15 6.39 16 11 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 12 C 0.09 3.61 6.07 71.98 0.44 4.04 16 13 O -0.57 -23.08 10.85 -148.98 -1.62 -24.69 16 14 C -0.12 -4.01 5.25 30.67 0.16 -3.85 16 15 C -0.11 -3.38 5.88 30.62 0.18 -3.20 16 16 C -0.12 -4.25 5.27 30.67 0.16 -4.09 16 17 C 0.15 6.62 2.10 44.98 0.09 6.72 16 18 H 0.04 1.54 7.47 -2.39 -0.02 1.52 16 19 C 0.08 3.34 5.60 71.98 0.40 3.74 16 20 O -0.56 -25.54 11.59 -148.98 -1.73 -27.27 16 21 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 22 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.03 1.24 7.42 -2.38 -0.02 1.23 16 24 H 0.38 11.86 9.12 -74.06 -0.68 11.18 16 25 H 0.05 1.84 7.36 -2.39 -0.02 1.82 16 26 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.05 1.98 7.41 -2.39 -0.02 1.96 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.80 2.93 -2.39 -0.01 1.80 16 33 H 0.37 14.33 9.12 -74.06 -0.68 13.65 16 Total: -1.00 -68.90 250.24 -0.61 -69.51 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.28 Total: 24.06 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 2.44 Total: -0.64 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -1.10 Total: -87.84 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -3.34 Total: -51.96 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.68 Total: 46.87 kcal Total: -68.90 -0.61 -69.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150233900.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.707 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds