Wall clock time and date at job start Mon Mar 30 2020 20:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.54005 * 2 1 4 4 C 1.53100 * 109.50487 * 120.10331 * 2 1 3 5 5 N 1.47019 * 109.25618 * 63.08954 * 4 2 1 6 6 C 1.47020 * 110.75264 * 58.61322 * 5 4 2 7 7 C 1.53097 * 109.25457 * 301.38411 * 6 5 4 8 8 H 1.08998 * 109.51128 * 296.91230 * 7 6 5 9 9 C 1.53009 * 109.53923 * 176.80346 * 7 6 5 10 10 O 1.42898 * 109.47003 * 175.19478 * 9 7 6 11 11 C 1.34928 * 116.99826 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99823 * 0.02562 * 11 10 9 13 13 C 1.38638 * 119.99821 * 179.97438 * 11 10 9 14 14 N 1.31583 * 119.99666 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00175 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46986 * 89.99336 * 15 13 11 17 17 H 1.48494 * 109.47154 * 209.99489 * 15 13 11 18 18 H 1.48502 * 109.46903 * 329.99546 * 15 13 11 19 19 O 1.43010 * 109.50611 * 239.88875 * 2 1 3 20 20 H 1.09006 * 109.47008 * 299.89124 * 1 2 3 21 21 H 1.08999 * 109.46970 * 59.89578 * 1 2 3 22 22 H 1.09002 * 109.46841 * 179.89373 * 1 2 3 23 23 H 1.08999 * 109.47063 * 180.10571 * 3 2 1 24 24 H 1.08997 * 109.47232 * 300.10695 * 3 2 1 25 25 H 1.08998 * 109.47288 * 60.11008 * 3 2 1 26 26 H 1.08991 * 109.51115 * 303.15659 * 4 2 1 27 27 H 1.09001 * 109.54187 * 183.03752 * 4 2 1 28 28 H 1.00901 * 110.99924 * 182.38630 * 5 4 2 29 29 H 1.08998 * 109.50492 * 61.31809 * 6 5 4 30 30 H 1.08993 * 109.50687 * 181.44928 * 6 5 4 31 31 H 1.08993 * 109.47235 * 295.19993 * 9 7 6 32 32 H 1.08999 * 109.46945 * 55.19736 * 9 7 6 33 33 H 0.97002 * 119.99728 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4419 0.0000 4 6 2.0412 -0.7238 1.2485 5 7 1.6110 -2.1290 1.2046 6 6 2.1186 -2.7916 -0.0057 7 6 1.6065 -2.0470 -1.2415 8 1 0.5188 -2.1065 -1.2776 9 6 2.1952 -2.6828 -2.5025 10 8 1.6305 -2.0601 -3.6581 11 6 2.0466 -2.5087 -4.8606 12 1 2.7746 -3.3044 -4.9178 13 6 1.5389 -1.9488 -6.0229 14 7 1.9451 -2.3860 -7.1956 15 14 0.2792 -0.5730 -5.9240 16 1 0.9782 0.7368 -5.8935 17 1 -0.6116 -0.6312 -7.1107 18 1 -0.5303 -0.7309 -4.6891 19 8 2.0076 -0.6763 -1.1661 20 1 -0.3633 0.5122 0.8910 21 1 -0.3633 0.5155 -0.8890 22 1 -0.3633 -1.0277 -0.0019 23 1 3.1318 1.4406 -0.0019 24 1 1.6775 1.9567 -0.8890 25 1 1.6807 1.9556 0.8909 26 1 1.6331 -0.2460 2.1390 27 1 3.1299 -0.6773 1.2768 28 1 1.9013 -2.6221 2.0356 29 1 3.2084 -2.7780 0.0019 30 1 1.7670 -3.8230 -0.0306 31 1 3.2765 -2.5458 -2.5077 32 1 1.9639 -3.7479 -2.5142 33 1 1.5895 -1.9945 -8.0088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158608692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:56 Heat of formation + Delta-G solvation = -78.584529 kcal Electronic energy + Delta-G solvation = -15296.707495 eV Core-core repulsion = 12744.123653 eV Total energy + Delta-G solvation = -2552.583842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.76796 -36.43467 -34.49008 -33.61654 -31.74338 -29.49507 -27.22861 -26.25336 -24.37606 -22.93342 -21.32717 -19.11823 -17.50314 -16.47845 -16.22330 -15.62100 -14.74453 -14.56967 -14.27600 -13.92386 -13.45773 -13.31578 -12.98310 -12.21272 -12.15913 -11.94032 -11.75944 -11.65687 -11.52868 -10.99159 -10.80213 -10.77005 -10.08049 -9.85643 -9.54963 -9.35455 -9.18973 -8.48057 -8.09591 -5.93137 -3.60088 3.48761 3.52720 3.70620 3.93608 4.04743 4.64823 4.78770 4.88312 5.02146 5.12872 5.30436 5.40059 5.46051 5.56785 5.61625 5.66738 5.72379 5.82600 5.95812 6.00084 6.06437 6.24601 6.30177 6.38648 6.49253 6.61327 6.80282 7.20534 7.65319 7.97088 8.42774 9.47249 10.03029 11.19602 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.008931 C = 0.007857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.648085 B = 3134.393098 C = 3562.855607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.108 3.892 3 C -0.137 4.137 4 C 0.033 3.967 5 N -0.685 5.685 6 C 0.029 3.971 7 C 0.094 3.906 8 H 0.072 0.928 9 C 0.093 3.907 10 O -0.324 6.324 11 C -0.356 4.356 12 H 0.078 0.922 13 C 0.043 3.957 14 N -0.915 5.915 15 Si 0.908 3.092 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.264 1.264 19 O -0.357 6.357 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.342 0.658 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 3.460 18.198 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.068 3.932 3 C -0.195 4.195 4 C -0.096 4.096 5 N -0.316 5.316 6 C -0.101 4.101 7 C 0.036 3.964 8 H 0.090 0.910 9 C 0.015 3.985 10 O -0.240 6.240 11 C -0.434 4.434 12 H 0.096 0.904 13 C -0.153 4.153 14 N -0.561 5.561 15 Si 0.736 3.264 16 H -0.208 1.208 17 H -0.219 1.219 18 H -0.189 1.189 19 O -0.276 6.276 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.160 0.840 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.609 3.871 17.651 18.142 hybrid contribution 0.496 0.125 0.377 0.635 sum -1.113 3.996 18.028 18.499 Atomic orbital electron populations 1.22266 0.95154 1.03318 1.01701 1.21512 0.94023 0.92514 0.85154 1.21722 1.01696 0.93560 1.02483 1.22612 0.98131 0.89682 0.99195 1.60497 1.63598 1.02702 1.04813 1.22537 0.98080 0.98789 0.90695 1.22199 0.99655 0.81561 0.92963 0.90969 1.21954 0.96556 0.94625 0.85355 1.85268 1.65811 1.60911 1.11975 1.20380 1.23514 1.18462 0.81023 0.90441 1.24296 0.98661 0.98671 0.93714 1.69697 1.45585 1.44006 0.96819 0.86119 0.81260 0.81880 0.77104 1.20753 1.21924 1.18891 1.88196 1.74813 1.22967 1.41586 0.92356 0.92118 0.91072 0.92046 0.91307 0.91436 0.90112 0.94441 0.83996 0.94124 0.89507 0.94586 0.93696 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 8.17 37.16 0.30 -2.08 16 2 C 0.11 1.60 1.11 -90.57 -0.10 1.50 16 3 C -0.14 -1.73 8.85 37.16 0.33 -1.40 16 4 C 0.03 0.41 5.46 -3.71 -0.02 0.39 16 5 N -0.69 -8.34 6.29 -113.49 -0.71 -9.05 16 6 C 0.03 0.40 6.05 -3.71 -0.02 0.38 16 7 C 0.09 1.74 2.69 -26.68 -0.07 1.67 16 8 H 0.07 1.39 6.49 -51.93 -0.34 1.05 16 9 C 0.09 2.04 5.68 37.16 0.21 2.25 16 10 O -0.32 -9.02 8.57 -21.23 -0.18 -9.20 16 11 C -0.36 -10.90 10.35 30.88 0.32 -10.58 16 12 H 0.08 2.45 8.00 -52.49 -0.42 2.03 16 13 C 0.04 1.34 5.49 -17.51 -0.10 1.24 16 14 N -0.92 -29.17 13.96 55.48 0.77 -28.40 16 15 Si 0.91 24.33 28.62 -169.99 -4.86 19.47 16 16 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 17 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 18 H -0.26 -7.08 7.11 56.52 0.40 -6.68 16 19 O -0.36 -6.94 9.89 -39.95 -0.40 -7.33 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 22 H 0.07 1.08 6.12 -51.93 -0.32 0.76 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.34 3.24 8.90 -39.29 -0.35 2.89 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.27 7.98 8.31 -40.82 -0.34 7.65 16 LS Contribution 269.90 15.07 4.07 4.07 Total: -1.00 -33.99 269.90 -5.67 -39.66 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.21 Total: -2.58 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 0.85 Total: -6.64 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.06 Total: -37.45 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.58 Total: -16.54 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -4.86 Total: 19.47 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -33.99 -5.67 -39.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158608692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.921 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds