Wall clock time and date at job start Mon Mar 30 2020 20:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.54005 * 2 1 4 4 C 1.53100 * 109.50487 * 120.10331 * 2 1 3 5 5 N 1.47019 * 109.25618 * 63.08954 * 4 2 1 6 6 C 1.47020 * 110.75264 * 58.61322 * 5 4 2 7 7 C 1.53097 * 109.25457 * 301.38411 * 6 5 4 8 8 H 1.08998 * 109.51128 * 296.91230 * 7 6 5 9 9 C 1.53009 * 109.53923 * 176.80346 * 7 6 5 10 10 O 1.42898 * 109.47003 * 175.19478 * 9 7 6 11 11 C 1.34928 * 116.99826 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99823 * 0.02562 * 11 10 9 13 13 C 1.38638 * 119.99821 * 179.97438 * 11 10 9 14 14 N 1.31583 * 119.99666 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00175 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46986 * 89.99336 * 15 13 11 17 17 H 1.48494 * 109.47154 * 209.99489 * 15 13 11 18 18 H 1.48502 * 109.46903 * 329.99546 * 15 13 11 19 19 O 1.43010 * 109.50611 * 239.88875 * 2 1 3 20 20 H 1.09006 * 109.47008 * 299.89124 * 1 2 3 21 21 H 1.08999 * 109.46970 * 59.89578 * 1 2 3 22 22 H 1.09002 * 109.46841 * 179.89373 * 1 2 3 23 23 H 1.08999 * 109.47063 * 180.10571 * 3 2 1 24 24 H 1.08997 * 109.47232 * 300.10695 * 3 2 1 25 25 H 1.08998 * 109.47288 * 60.11008 * 3 2 1 26 26 H 1.08991 * 109.51115 * 303.15659 * 4 2 1 27 27 H 1.09001 * 109.54187 * 183.03752 * 4 2 1 28 28 H 1.00901 * 110.99924 * 182.38630 * 5 4 2 29 29 H 1.08998 * 109.50492 * 61.31809 * 6 5 4 30 30 H 1.08993 * 109.50687 * 181.44928 * 6 5 4 31 31 H 1.08993 * 109.47235 * 295.19993 * 9 7 6 32 32 H 1.08999 * 109.46945 * 55.19736 * 9 7 6 33 33 H 0.97002 * 119.99728 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4419 0.0000 4 6 2.0412 -0.7238 1.2485 5 7 1.6110 -2.1290 1.2046 6 6 2.1186 -2.7916 -0.0057 7 6 1.6065 -2.0470 -1.2415 8 1 0.5188 -2.1065 -1.2776 9 6 2.1952 -2.6828 -2.5025 10 8 1.6305 -2.0601 -3.6581 11 6 2.0466 -2.5087 -4.8606 12 1 2.7746 -3.3044 -4.9178 13 6 1.5389 -1.9488 -6.0229 14 7 1.9451 -2.3860 -7.1956 15 14 0.2792 -0.5730 -5.9240 16 1 0.9782 0.7368 -5.8935 17 1 -0.6116 -0.6312 -7.1107 18 1 -0.5303 -0.7309 -4.6891 19 8 2.0076 -0.6763 -1.1661 20 1 -0.3633 0.5122 0.8910 21 1 -0.3633 0.5155 -0.8890 22 1 -0.3633 -1.0277 -0.0019 23 1 3.1318 1.4406 -0.0019 24 1 1.6775 1.9567 -0.8890 25 1 1.6807 1.9556 0.8909 26 1 1.6331 -0.2460 2.1390 27 1 3.1299 -0.6773 1.2768 28 1 1.9013 -2.6221 2.0356 29 1 3.2084 -2.7780 0.0019 30 1 1.7670 -3.8230 -0.0306 31 1 3.2765 -2.5458 -2.5077 32 1 1.9639 -3.7479 -2.5142 33 1 1.5895 -1.9945 -8.0088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158608692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:56 Heat of formation + Delta-G solvation = -104.872771 kcal Electronic energy + Delta-G solvation = -15297.847439 eV Core-core repulsion = 12744.123653 eV Total energy + Delta-G solvation = -2553.723785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.99287 -38.46000 -35.60410 -34.99342 -33.99641 -30.93515 -28.30525 -27.67073 -26.16094 -24.45040 -22.74957 -20.35315 -19.72761 -17.87155 -17.55981 -17.34317 -16.19597 -15.82538 -15.62392 -15.25331 -15.14858 -15.05215 -14.62802 -13.87979 -13.69453 -13.24899 -13.01626 -12.89112 -12.78906 -12.65523 -12.29596 -12.13551 -11.91228 -11.66894 -11.52433 -11.16104 -10.56761 -10.40078 -9.48654 -8.30223 -6.00108 1.34294 1.39055 1.58201 2.42338 2.68557 2.95396 3.02904 3.39858 3.80638 3.93469 4.02287 4.07766 4.20050 4.36077 4.42268 4.51466 4.62647 4.66920 4.69741 4.75469 4.86539 4.94576 5.00360 5.06859 5.25843 5.39397 5.54039 5.78195 6.10731 6.39070 6.40853 7.08968 7.78792 8.85569 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.008931 C = 0.007857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.648085 B = 3134.393098 C = 3562.855607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 C -0.135 4.135 4 C 0.038 3.962 5 N -0.684 5.684 6 C 0.039 3.961 7 C 0.099 3.901 8 H 0.060 0.940 9 C 0.084 3.916 10 O -0.343 6.343 11 C -0.361 4.361 12 H 0.052 0.948 13 C -0.012 4.012 14 N -0.951 5.951 15 Si 0.975 3.025 16 H -0.276 1.276 17 H -0.274 1.274 18 H -0.268 1.268 19 O -0.395 6.395 20 H 0.089 0.911 21 H 0.039 0.961 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.038 0.962 28 H 0.363 0.637 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 4.360 20.511 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 C -0.192 4.192 4 C -0.091 4.091 5 N -0.317 5.317 6 C -0.091 4.091 7 C 0.041 3.959 8 H 0.078 0.922 9 C 0.007 3.993 10 O -0.259 6.259 11 C -0.439 4.439 12 H 0.070 0.930 13 C -0.205 4.205 14 N -0.598 5.598 15 Si 0.799 3.201 16 H -0.202 1.202 17 H -0.199 1.199 18 H -0.192 1.192 19 O -0.315 6.315 20 H 0.108 0.892 21 H 0.058 0.942 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.121 0.879 26 H 0.130 0.870 27 H 0.056 0.944 28 H 0.183 0.817 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.367 4.756 19.996 20.689 hybrid contribution 0.792 -0.185 -0.277 0.859 sum -1.575 4.570 19.719 20.303 Atomic orbital electron populations 1.22230 0.94944 1.02622 1.02194 1.21943 0.94395 0.93491 0.84886 1.21762 1.01634 0.92452 1.03361 1.22595 0.98258 0.89467 0.98787 1.60435 1.63544 1.02930 1.04781 1.22360 0.97998 0.99045 0.89650 1.22063 0.98704 0.82137 0.92966 0.92163 1.22303 0.96409 0.95754 0.84881 1.85209 1.66511 1.61920 1.12292 1.20399 1.22970 1.17867 0.82666 0.93000 1.25159 1.00769 1.01202 0.93377 1.69789 1.46948 1.45451 0.97603 0.85129 0.78835 0.78674 0.77432 1.20209 1.19946 1.19217 1.88133 1.75503 1.23436 1.44411 0.89228 0.94229 0.92299 0.92173 0.93091 0.87883 0.86997 0.94364 0.81703 0.94004 0.87814 0.95124 0.92293 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 8.17 71.98 0.59 -3.75 16 2 C 0.09 2.54 1.11 -10.76 -0.01 2.53 16 3 C -0.13 -3.13 8.85 71.98 0.64 -2.49 16 4 C 0.04 0.80 5.46 86.31 0.47 1.27 16 5 N -0.68 -14.47 6.29 -512.98 -3.23 -17.70 16 6 C 0.04 1.03 6.05 86.31 0.52 1.55 16 7 C 0.10 3.62 2.69 30.63 0.08 3.70 16 8 H 0.06 2.31 6.49 -2.39 -0.02 2.30 16 9 C 0.08 3.71 5.68 71.99 0.41 4.12 16 10 O -0.34 -19.42 8.57 -77.46 -0.66 -20.08 16 11 C -0.36 -22.64 10.35 67.92 0.70 -21.94 16 12 H 0.05 3.42 8.00 -2.91 -0.02 3.39 16 13 C -0.01 -0.74 5.49 84.83 0.47 -0.27 16 14 N -0.95 -61.35 13.96 21.61 0.30 -61.04 16 15 Si 0.97 50.51 28.62 68.60 1.96 52.47 16 16 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 17 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.27 -13.86 7.11 99.48 0.71 -13.16 16 19 O -0.39 -15.20 9.89 -144.46 -1.43 -16.63 16 20 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 21 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.06 1.70 6.12 -2.39 -0.01 1.69 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.36 5.46 8.90 -89.69 -0.80 4.66 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.27 16.43 8.31 -92.71 -0.77 15.66 16 Total: -1.00 -73.84 269.90 1.10 -72.74 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.28 Total: 5.52 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 3.87 Total: -15.27 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.93 Total: -78.75 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -2.09 Total: -36.71 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 1.96 Total: 52.47 kcal Total: -73.84 1.10 -72.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158608692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.132 kcal (2) G-P(sol) polarization free energy of solvation -73.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds