Wall clock time and date at job start Mon Mar 30 2020 20:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46927 * 2 1 4 4 C 1.38308 * 125.60744 * 89.97605 * 3 2 1 5 5 C 1.39928 * 125.69231 * 359.97438 * 4 3 2 6 6 H 1.07996 * 120.00048 * 18.87437 * 5 4 3 7 7 C 1.40189 * 119.99960 * 198.86534 * 5 4 3 8 8 N 1.30752 * 120.00046 * 24.11891 * 7 5 4 9 9 Si 1.86801 * 119.99900 * 204.11237 * 7 5 4 10 10 H 1.48501 * 109.47053 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47064 * 300.00285 * 9 7 5 12 12 H 1.48502 * 109.47015 * 60.00682 * 9 7 5 13 13 C 1.39123 * 108.61325 * 180.26197 * 4 3 2 14 14 C 1.40939 * 107.49503 * 359.61713 * 13 4 3 15 15 C 1.40479 * 133.09465 * 180.16540 * 14 13 4 16 16 C 1.36429 * 119.80509 * 180.27417 * 15 14 13 17 17 C 1.38945 * 120.59211 * 359.96157 * 16 15 14 18 18 C 1.37955 * 120.69581 * 0.02562 * 17 16 15 19 19 C 1.38048 * 125.59698 * 270.00070 * 3 2 1 20 20 H 1.08998 * 109.46921 * 300.00081 * 1 2 3 21 21 H 1.08995 * 109.47523 * 60.00446 * 1 2 3 22 22 H 1.09001 * 109.46814 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47401 * 239.99819 * 2 1 3 24 24 H 1.09000 * 109.47321 * 119.99972 * 2 1 3 25 25 H 0.97000 * 120.00065 * 5.86495 * 8 7 5 26 26 H 1.08005 * 126.25642 * 179.71665 * 13 4 3 27 27 H 1.08007 * 120.09580 * 0.27428 * 15 14 13 28 28 H 1.08005 * 119.70740 * 179.97438 * 16 15 14 29 29 H 1.08003 * 119.65028 * 180.02562 * 17 16 15 30 30 H 1.08006 * 120.05231 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2863 2.1406 1.1245 5 6 2.1357 1.7180 2.4499 6 1 2.0833 0.6636 2.6778 7 6 2.0531 2.6632 3.4819 8 7 1.6477 3.8792 3.2238 9 14 2.5219 2.1853 5.2258 10 1 2.3474 3.3553 6.1235 11 1 1.6503 1.0745 5.6860 12 1 3.9402 1.7462 5.2544 13 6 2.7242 3.3969 0.7179 14 6 2.7337 3.4067 -0.6915 15 6 3.0794 4.3814 -1.6422 16 6 2.9794 4.0965 -2.9727 17 6 2.5389 2.8490 -3.3975 18 6 2.1938 1.8751 -2.4834 19 6 2.2861 2.1388 -1.1225 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.3236 4.1046 2.3378 26 1 3.0069 4.2149 1.3641 27 1 3.4234 5.3535 -1.3208 28 1 3.2452 4.8472 -3.7023 29 1 2.4659 2.6397 -4.4545 30 1 1.8523 0.9092 -2.8252 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220811944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:08 Heat of formation + Delta-G solvation = 32.045939 kcal Electronic energy + Delta-G solvation = -13947.719709 eV Core-core repulsion = 11707.242084 eV Total energy + Delta-G solvation = -2240.477625 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96224 -36.15638 -34.11741 -32.48833 -30.02630 -28.48287 -27.27382 -25.13304 -22.82647 -21.18006 -20.18770 -19.25828 -17.51803 -15.92205 -15.26486 -14.43737 -14.07429 -13.91383 -13.72763 -12.97923 -12.77811 -12.60092 -12.04188 -11.73737 -11.64458 -11.25449 -11.10342 -10.75668 -10.52546 -10.46044 -10.18010 -9.87711 -9.66365 -9.11414 -8.53216 -7.36540 -7.14947 -6.54584 -4.46507 2.26227 2.73218 3.07384 3.13395 3.31573 3.85348 3.97231 4.09762 4.91250 5.16985 5.33675 5.64240 5.69328 5.80933 5.89791 5.94144 6.11043 6.19092 6.42316 6.57482 6.66696 6.74391 6.85778 7.18528 7.41874 7.43822 7.51183 7.59957 7.74509 8.02848 8.06305 8.22259 8.53151 8.78608 8.98490 10.01502 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034698 B = 0.010290 C = 0.008354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.770143 B = 2720.380254 C = 3351.024799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.124 3.876 3 N -0.512 5.512 4 C 0.277 3.723 5 C -0.518 4.518 6 H 0.076 0.924 7 C 0.047 3.953 8 N -0.787 5.787 9 Si 1.072 2.928 10 H -0.272 1.272 11 H -0.277 1.277 12 H -0.274 1.274 13 C -0.380 4.380 14 C -0.028 4.028 15 C -0.143 4.143 16 C -0.134 4.134 17 C -0.181 4.181 18 C -0.116 4.116 19 C 0.043 3.957 20 H 0.064 0.936 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.308 0.692 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 -4.741 -2.838 5.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.001 3.999 3 N -0.203 5.203 4 C 0.172 3.828 5 C -0.550 4.550 6 H 0.094 0.906 7 C -0.178 4.178 8 N -0.410 5.410 9 Si 0.895 3.105 10 H -0.197 1.197 11 H -0.202 1.202 12 H -0.199 1.199 13 C -0.402 4.402 14 C -0.033 4.033 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.200 4.200 18 C -0.138 4.138 19 C -0.059 4.059 20 H 0.083 0.917 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.123 0.877 26 H 0.141 0.859 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.612 -4.370 -1.334 4.610 hybrid contribution -0.213 -0.668 -1.714 1.852 sum -0.825 -5.039 -3.048 5.946 Atomic orbital electron populations 1.22125 0.96107 1.01218 1.02871 1.21246 0.94340 0.82279 1.01991 1.44347 1.60012 1.11381 1.04560 1.18120 0.90547 0.88455 0.85693 1.19662 1.48661 0.96765 0.89925 0.90592 1.26937 0.92444 0.92307 1.06133 1.70335 1.22594 1.19729 1.28352 0.83542 0.77662 0.76662 0.72657 1.19661 1.20212 1.19927 1.20600 1.27903 0.99958 0.91703 1.18212 0.98665 0.92236 0.94154 1.20116 1.05776 0.98075 0.92194 1.20223 1.03547 0.96552 0.95056 1.20238 1.08129 0.94495 0.97138 1.19724 1.05370 0.98709 0.89954 1.18225 1.07489 0.92409 0.87798 0.91677 0.92761 0.92233 0.91640 0.90323 0.87713 0.85870 0.88067 0.88283 0.88090 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.24 37.16 0.38 -2.41 16 2 C 0.12 2.34 6.55 -4.04 -0.03 2.31 16 3 N -0.51 -12.13 2.84 -111.52 -0.32 -12.45 16 4 C 0.28 7.29 6.30 -83.98 -0.53 6.76 16 5 C -0.52 -13.21 8.85 -38.22 -0.34 -13.54 16 6 H 0.08 1.83 7.16 -52.49 -0.38 1.45 16 7 C 0.05 1.16 5.24 -17.28 -0.09 1.06 16 8 N -0.79 -20.73 12.55 55.56 0.70 -20.03 16 9 Si 1.07 20.87 30.00 -169.99 -5.10 15.77 16 10 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 11 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 12 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 13 C -0.38 -10.28 8.84 -38.23 -0.34 -10.62 16 14 C -0.03 -0.72 6.14 -106.91 -0.66 -1.37 16 15 C -0.14 -3.24 10.08 -39.39 -0.40 -3.64 16 16 C -0.13 -2.72 9.97 -39.97 -0.40 -3.11 16 17 C -0.18 -3.58 10.02 -39.42 -0.40 -3.98 16 18 C -0.12 -2.46 9.96 -39.43 -0.39 -2.85 16 19 C 0.04 1.03 6.81 -83.69 -0.57 0.46 16 20 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 1.10 8.12 -51.93 -0.42 0.67 16 24 H 0.08 1.43 7.21 -51.93 -0.37 1.06 16 25 H 0.31 8.46 6.28 -40.82 -0.26 8.20 16 26 H 0.12 3.43 6.80 -52.48 -0.36 3.08 16 27 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 28 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 29 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 30 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 257.92 15.07 3.89 3.89 Total: -1.00 -28.19 257.92 -8.12 -36.31 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.54 Total: 7.43 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: -3.75 Total: -30.91 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.38 Total: -32.49 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.10 Total: 15.77 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.19 -8.12 -36.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220811944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.355 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds