Wall clock time and date at job start Mon Mar 30 2020 20:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46927 * 2 1 4 4 C 1.38308 * 125.60744 * 89.97605 * 3 2 1 5 5 C 1.39928 * 125.69231 * 359.97438 * 4 3 2 6 6 H 1.07996 * 120.00048 * 18.87437 * 5 4 3 7 7 C 1.40189 * 119.99960 * 198.86534 * 5 4 3 8 8 N 1.30752 * 120.00046 * 24.11891 * 7 5 4 9 9 Si 1.86801 * 119.99900 * 204.11237 * 7 5 4 10 10 H 1.48501 * 109.47053 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47064 * 300.00285 * 9 7 5 12 12 H 1.48502 * 109.47015 * 60.00682 * 9 7 5 13 13 C 1.39123 * 108.61325 * 180.26197 * 4 3 2 14 14 C 1.40939 * 107.49503 * 359.61713 * 13 4 3 15 15 C 1.40479 * 133.09465 * 180.16540 * 14 13 4 16 16 C 1.36429 * 119.80509 * 180.27417 * 15 14 13 17 17 C 1.38945 * 120.59211 * 359.96157 * 16 15 14 18 18 C 1.37955 * 120.69581 * 0.02562 * 17 16 15 19 19 C 1.38048 * 125.59698 * 270.00070 * 3 2 1 20 20 H 1.08998 * 109.46921 * 300.00081 * 1 2 3 21 21 H 1.08995 * 109.47523 * 60.00446 * 1 2 3 22 22 H 1.09001 * 109.46814 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47401 * 239.99819 * 2 1 3 24 24 H 1.09000 * 109.47321 * 119.99972 * 2 1 3 25 25 H 0.97000 * 120.00065 * 5.86495 * 8 7 5 26 26 H 1.08005 * 126.25642 * 179.71665 * 13 4 3 27 27 H 1.08007 * 120.09580 * 0.27428 * 15 14 13 28 28 H 1.08005 * 119.70740 * 179.97438 * 16 15 14 29 29 H 1.08003 * 119.65028 * 180.02562 * 17 16 15 30 30 H 1.08006 * 120.05231 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2863 2.1406 1.1245 5 6 2.1357 1.7180 2.4499 6 1 2.0833 0.6636 2.6778 7 6 2.0531 2.6632 3.4819 8 7 1.6477 3.8792 3.2238 9 14 2.5219 2.1853 5.2258 10 1 2.3474 3.3553 6.1235 11 1 1.6503 1.0745 5.6860 12 1 3.9402 1.7462 5.2544 13 6 2.7242 3.3969 0.7179 14 6 2.7337 3.4067 -0.6915 15 6 3.0794 4.3814 -1.6422 16 6 2.9794 4.0965 -2.9727 17 6 2.5389 2.8490 -3.3975 18 6 2.1938 1.8751 -2.4834 19 6 2.2861 2.1388 -1.1225 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.3236 4.1046 2.3378 26 1 3.0069 4.2149 1.3641 27 1 3.4234 5.3535 -1.3208 28 1 3.2452 4.8472 -3.7023 29 1 2.4659 2.6397 -4.4545 30 1 1.8523 0.9092 -2.8252 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220811944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:07 Heat of formation + Delta-G solvation = 17.791035 kcal Electronic energy + Delta-G solvation = -13948.337848 eV Core-core repulsion = 11707.242084 eV Total energy + Delta-G solvation = -2241.095764 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.74311 -37.86732 -35.91924 -34.14458 -31.69716 -30.27712 -28.99656 -26.97785 -24.38238 -22.95114 -21.92491 -21.05474 -19.34548 -17.60073 -16.98485 -16.16014 -15.76689 -15.49872 -15.28049 -14.66091 -14.60076 -14.24626 -13.60515 -13.40152 -13.32999 -12.87063 -12.74597 -12.33419 -12.06765 -11.96922 -11.84342 -11.61382 -11.43752 -10.92063 -10.32521 -9.30857 -8.98654 -8.34947 -6.43295 0.51409 1.01673 1.48890 1.53574 1.80720 2.10666 2.26910 2.42659 3.09079 3.32212 3.88310 4.04293 4.24167 4.34872 4.38102 4.43492 4.67696 4.71566 4.80241 4.90283 5.05043 5.12995 5.19360 5.40251 5.50475 5.58933 5.63966 5.82296 5.93453 6.14271 6.26476 6.37032 6.67600 6.93725 7.14883 8.03001 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034698 B = 0.010290 C = 0.008354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.770143 B = 2720.380254 C = 3351.024799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.114 3.886 3 N -0.515 5.515 4 C 0.255 3.745 5 C -0.542 4.542 6 H 0.085 0.915 7 C 0.009 3.991 8 N -0.814 5.814 9 Si 1.125 2.875 10 H -0.274 1.274 11 H -0.251 1.251 12 H -0.264 1.264 13 C -0.414 4.414 14 C -0.072 4.072 15 C -0.157 4.157 16 C -0.131 4.131 17 C -0.162 4.162 18 C -0.121 4.121 19 C 0.025 3.975 20 H 0.036 0.964 21 H 0.049 0.951 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.288 0.712 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.138 0.862 29 H 0.146 0.854 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 -6.503 -4.720 8.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.007 4.007 3 N -0.205 5.205 4 C 0.149 3.851 5 C -0.574 4.574 6 H 0.103 0.897 7 C -0.209 4.209 8 N -0.438 5.438 9 Si 0.940 3.060 10 H -0.198 1.198 11 H -0.175 1.175 12 H -0.189 1.189 13 C -0.436 4.436 14 C -0.076 4.076 15 C -0.176 4.176 16 C -0.151 4.151 17 C -0.181 4.181 18 C -0.142 4.142 19 C -0.077 4.077 20 H 0.055 0.945 21 H 0.068 0.932 22 H 0.119 0.881 23 H 0.111 0.889 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.156 0.844 29 H 0.164 0.836 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.709 -6.161 -3.253 7.003 hybrid contribution -0.166 -0.085 -1.423 1.435 sum -0.875 -6.247 -4.675 7.851 Atomic orbital electron populations 1.22040 0.94592 1.03363 1.01210 1.21613 0.95566 0.80091 1.03409 1.44575 1.59517 1.12775 1.03668 1.18325 0.90977 0.88925 0.86915 1.19910 1.49921 0.97363 0.90197 0.89697 1.28533 0.90894 0.91559 1.09951 1.70447 1.25127 1.21046 1.27136 0.82927 0.78246 0.77024 0.67755 1.19831 1.17454 1.18897 1.20539 1.30078 1.00214 0.92805 1.18552 1.00828 0.94349 0.93885 1.20408 1.05965 0.97951 0.93307 1.20685 1.02043 0.97899 0.94437 1.20854 1.04657 0.93394 0.99198 1.20169 1.04831 1.00614 0.88581 1.18655 1.07772 0.92048 0.89222 0.94478 0.93192 0.88097 0.88895 0.90150 0.89874 0.88626 0.87730 0.84435 0.83604 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 10.24 71.98 0.74 -4.22 16 2 C 0.11 4.14 6.55 86.38 0.57 4.71 16 3 N -0.52 -24.60 2.84 -506.74 -1.44 -26.04 16 4 C 0.26 14.04 6.30 38.74 0.24 14.29 16 5 C -0.54 -28.65 8.85 23.15 0.20 -28.45 16 6 H 0.08 4.17 7.16 -2.91 -0.02 4.15 16 7 C 0.01 0.46 5.24 85.33 0.45 0.90 16 8 N -0.81 -45.50 12.55 21.87 0.27 -45.22 16 9 Si 1.12 42.52 30.00 68.60 2.06 44.58 16 10 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 11 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 12 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 13 C -0.41 -23.89 8.84 23.14 0.20 -23.69 16 14 C -0.07 -3.76 6.14 -21.35 -0.13 -3.89 16 15 C -0.16 -7.13 10.08 22.39 0.23 -6.91 16 16 C -0.13 -4.89 9.97 22.02 0.22 -4.67 16 17 C -0.16 -5.67 10.02 22.37 0.22 -5.45 16 18 C -0.12 -4.72 9.96 22.37 0.22 -4.49 16 19 C 0.03 1.21 6.81 39.06 0.27 1.48 16 20 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.09 2.83 8.12 -2.39 -0.02 2.81 16 24 H 0.08 2.86 7.21 -2.39 -0.02 2.84 16 25 H 0.29 17.14 6.28 -92.71 -0.58 16.56 16 26 H 0.10 5.85 6.80 -2.91 -0.02 5.83 16 27 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 28 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 29 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 30 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -64.85 257.92 5.63 -59.21 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 1.31 Total: 27.86 kcal Atomic # 6 Polarization: -63.82 SS G_CDS: 3.43 Total: -60.39 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -1.16 Total: -71.26 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.06 Total: 44.58 kcal Total: -64.85 5.63 -59.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220811944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.004 kcal (2) G-P(sol) polarization free energy of solvation -64.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds