Wall clock time and date at job start Mon Mar 30 2020 20:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47176 * 89.99381 * 8 6 4 10 10 H 1.48495 * 109.47439 * 209.99938 * 8 6 4 11 11 H 1.48500 * 109.46731 * 330.00116 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 H 1.08996 * 109.59899 * 305.32038 * 14 13 12 16 16 C 1.52943 * 109.60057 * 184.99701 * 14 13 12 17 17 C 1.53701 * 112.48935 * 209.96600 * 16 14 13 18 18 S 1.83393 * 104.97040 * 2.82732 * 17 16 14 19 19 C 1.55146 * 109.60373 * 65.46291 * 14 13 12 20 20 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 21 21 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 23 23 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 24 24 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 25 25 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 26 26 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 27 27 H 1.08998 * 108.88945 * 330.76465 * 16 14 13 28 28 H 1.09005 * 108.88515 * 89.31767 * 16 14 13 29 29 H 1.08997 * 110.34104 * 121.69776 * 17 16 14 30 30 H 1.08999 * 110.34250 * 243.95531 * 17 16 14 31 31 H 1.09010 * 111.13180 * 279.27952 * 19 14 13 32 32 H 1.08995 * 111.13609 * 43.45602 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6305 -0.5441 4.4118 10 1 1.3445 -0.9491 5.1123 11 1 2.4881 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 1 3.5480 -1.0076 -3.3402 16 6 2.7800 0.4427 -4.7376 17 6 2.5673 -0.2256 -6.1053 18 16 2.0838 -1.9520 -5.7189 19 6 1.5649 -1.6179 -3.9856 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7089 1.1613 3.4844 24 1 1.4495 -1.4979 -1.4101 25 1 1.0871 0.6163 -2.5526 26 1 2.7589 1.0462 -2.1182 27 1 2.0668 1.2598 -4.6294 28 1 3.7904 0.8498 -4.6994 29 1 1.7703 0.2774 -6.6529 30 1 3.4921 -0.2112 -6.6820 31 1 1.6650 -2.5097 -3.3666 32 1 0.5477 -1.2282 -3.9481 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226403002.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:10 Heat of formation + Delta-G solvation = -16.328535 kcal Electronic energy + Delta-G solvation = -12618.684899 eV Core-core repulsion = 10511.553551 eV Total energy + Delta-G solvation = -2107.131348 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.53815 -35.06244 -32.35993 -30.06581 -27.95095 -25.78055 -25.12390 -22.69202 -20.18074 -19.85464 -16.70119 -16.25122 -15.74817 -14.73181 -14.36423 -14.21344 -13.48901 -13.38875 -12.85304 -12.32529 -11.99428 -11.85987 -11.70947 -11.40066 -10.94611 -10.91218 -10.83179 -10.52129 -10.43315 -10.15065 -9.95374 -9.69794 -9.01864 -8.37247 -7.70496 -7.28156 -5.99664 -4.03082 1.89413 2.35817 3.32589 3.38735 3.43010 4.41697 4.55305 4.68838 4.92114 5.02131 5.26145 5.32064 5.45815 5.50945 5.64904 5.74030 5.80298 5.92569 6.05849 6.32253 6.44755 6.66107 6.80757 7.06617 7.33346 7.71396 7.86672 8.25030 8.49566 8.58986 9.04214 9.62547 11.07425 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.062426 B = 0.005908 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.423289 B = 4738.271149 C = 4849.101468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.684 5.684 13 C 0.070 3.930 14 C -0.089 4.089 15 H 0.093 0.907 16 C -0.125 4.125 17 C -0.065 4.065 18 S -0.317 6.317 19 C -0.055 4.055 20 H 0.004 0.996 21 H 0.028 0.972 22 H 0.089 0.911 23 H 0.259 0.741 24 H 0.324 0.676 25 H 0.021 0.979 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -0.667 -13.287 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.061 4.061 14 C -0.110 4.110 15 H 0.112 0.888 16 C -0.165 4.165 17 C -0.213 4.213 18 S -0.091 6.091 19 C -0.203 4.203 20 H 0.023 0.977 21 H 0.047 0.953 22 H 0.108 0.892 23 H 0.069 0.931 24 H 0.141 0.859 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.890 -1.488 -13.662 13.872 hybrid contribution -0.778 0.767 1.299 1.697 sum 1.112 -0.720 -12.363 12.434 Atomic orbital electron populations 1.22431 1.00710 0.99203 1.00487 1.19179 0.89594 0.94417 0.86514 0.94904 1.21162 1.30182 1.12469 0.89605 0.91922 1.24955 0.95313 0.95217 0.99077 1.69882 1.37337 1.23246 1.23358 0.86500 0.78448 0.80038 0.82413 1.20756 1.21419 1.19918 1.60836 1.58070 1.09045 1.03420 1.21923 0.98411 0.95736 0.90060 1.22125 0.99535 0.94469 0.94869 0.88849 1.22001 1.03553 0.99316 0.91581 1.23883 1.04212 0.93102 1.00108 1.87735 1.85385 1.16416 1.19539 1.24483 1.01557 1.02465 0.91835 0.97679 0.95328 0.89238 0.93067 0.85925 0.96116 0.91300 0.90939 0.90291 0.89564 0.88683 0.87229 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.94 37.16 0.33 -3.67 16 2 C 0.21 5.21 2.57 -68.86 -0.18 5.03 16 3 H 0.03 0.89 7.80 -51.93 -0.40 0.49 16 4 C -0.50 -13.62 8.84 -34.44 -0.30 -13.93 16 5 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.59 11.32 55.43 0.63 -24.97 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 12 N -0.68 -13.95 6.23 -107.94 -0.67 -14.63 16 13 C 0.07 1.17 4.74 -3.82 -0.02 1.16 16 14 C -0.09 -1.22 2.76 -89.51 -0.25 -1.46 16 15 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 16 C -0.13 -1.40 5.86 -26.40 -0.15 -1.55 16 17 C -0.06 -0.68 7.38 37.52 0.28 -0.40 16 18 S -0.32 -4.20 23.23 -107.50 -2.50 -6.70 16 19 C -0.06 -0.74 6.10 38.29 0.23 -0.50 16 20 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 21 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.32 6.24 7.33 -39.29 -0.29 5.96 16 25 H 0.02 0.35 7.41 -51.93 -0.38 -0.04 16 26 H 0.07 1.19 8.05 -51.93 -0.42 0.78 16 27 H 0.07 0.78 7.80 -51.93 -0.41 0.38 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.11 1.47 7.77 -51.92 -0.40 1.07 16 32 H 0.09 1.14 8.09 -51.93 -0.42 0.72 16 LS Contribution 268.74 15.07 4.05 4.05 Total: -1.00 -28.22 268.74 -8.75 -36.97 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.09 Total: 2.78 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -0.15 Total: -13.92 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.05 Total: -39.59 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -4.20 SS G_CDS: -2.50 Total: -6.70 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.22 -8.75 -36.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226403002.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.645 kcal (2) G-P(sol) polarization free energy of solvation -28.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds