Wall clock time and date at job start Mon Mar 30 2020 20:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47464 * 2 1 4 4 C 1.50696 * 109.47081 * 239.99623 * 2 1 3 5 5 H 1.07999 * 120.00635 * 240.00286 * 4 2 1 6 6 C 1.37885 * 119.99854 * 60.00657 * 4 2 1 7 7 N 1.31509 * 119.99862 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99802 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47496 * 89.99952 * 8 6 4 10 10 H 1.48507 * 109.46753 * 209.99608 * 8 6 4 11 11 H 1.48493 * 109.47545 * 329.99509 * 8 6 4 12 12 N 1.46905 * 109.46649 * 120.00072 * 2 1 3 13 13 C 1.46904 * 110.99791 * 274.99498 * 12 2 1 14 14 C 1.53003 * 109.46791 * 180.02562 * 13 12 2 15 15 H 1.08996 * 108.73248 * 52.05788 * 14 13 12 16 16 C 1.52934 * 108.88529 * 170.56699 * 14 13 12 17 17 C 1.55159 * 108.96139 * 150.89180 * 16 14 13 18 18 S 1.83988 * 100.90873 * 318.56189 * 17 16 14 19 19 C 1.53707 * 108.88501 * 293.54807 * 14 13 12 20 20 H 1.08998 * 109.47464 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46942 * 300.00292 * 1 2 3 22 22 H 1.09003 * 109.46642 * 59.99488 * 1 2 3 23 23 H 0.97002 * 119.99943 * 180.02562 * 7 6 4 24 24 H 1.00895 * 110.99669 * 38.95399 * 12 2 1 25 25 H 1.08996 * 109.46745 * 60.00679 * 13 12 2 26 26 H 1.08993 * 109.47146 * 300.00339 * 13 12 2 27 27 H 1.08999 * 109.60449 * 270.82305 * 16 14 13 28 28 H 1.09000 * 109.60581 * 31.14610 * 16 14 13 29 29 H 1.08994 * 111.13431 * 200.65015 * 17 16 14 30 30 H 1.08994 * 111.12916 * 76.47159 * 17 16 14 31 31 H 1.08999 * 110.34351 * 117.51369 * 19 14 13 32 32 H 1.08996 * 110.43289 * 355.30211 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3449 -2.1616 -4.4124 10 1 2.4874 -0.1402 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 7 2.0196 -0.6926 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5961 -0.5329 3.5743 15 1 3.5246 -1.0391 3.3104 16 6 2.8804 0.4723 4.6912 17 6 2.6776 -0.2262 6.0618 18 16 1.1554 -1.2055 5.7316 19 6 1.5537 -1.5862 3.9823 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.7084 1.1609 -3.4844 24 1 1.4494 -1.4979 1.4100 25 1 1.0871 0.6163 2.5525 26 1 2.7588 1.0461 2.1182 27 1 3.9075 0.8280 4.6104 28 1 2.1940 1.3150 4.6082 29 1 2.5112 0.5036 6.8540 30 1 3.5193 -0.8765 6.2996 31 1 1.9748 -2.5881 3.8991 32 1 0.6613 -1.4983 3.3628 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226403021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:14 Heat of formation + Delta-G solvation = -15.372923 kcal Electronic energy + Delta-G solvation = -12643.926785 eV Core-core repulsion = 10536.836875 eV Total energy + Delta-G solvation = -2107.089910 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.60130 -35.03144 -32.34022 -30.04050 -27.94037 -25.77697 -25.11793 -22.63754 -20.16797 -19.85487 -16.65178 -16.48191 -15.63415 -14.75277 -14.36415 -14.22787 -13.49783 -13.09717 -12.86907 -12.39485 -12.01960 -11.84495 -11.72164 -11.33812 -11.01362 -10.90959 -10.78912 -10.48732 -10.44468 -10.16219 -9.91618 -9.71822 -9.00387 -8.37117 -7.69559 -7.27236 -5.99124 -4.02598 1.89934 2.36690 3.32235 3.38615 3.43128 4.41912 4.55459 4.67899 4.97762 5.08651 5.16422 5.32439 5.44081 5.55905 5.61073 5.78529 5.82179 5.94348 6.07034 6.35273 6.44211 6.68321 6.82768 7.08213 7.34696 7.72648 7.87080 8.25871 8.50289 8.59715 9.04527 9.62861 11.07943 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.065158 B = 0.005927 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.621002 B = 4722.852605 C = 4757.538212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.685 5.685 13 C 0.068 3.932 14 C -0.096 4.096 15 H 0.088 0.912 16 C -0.119 4.119 17 C -0.065 4.065 18 S -0.319 6.319 19 C -0.055 4.055 20 H 0.027 0.973 21 H 0.005 0.995 22 H 0.089 0.911 23 H 0.260 0.740 24 H 0.323 0.677 25 H 0.023 0.977 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 -1.299 13.400 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.315 5.315 13 C -0.063 4.063 14 C -0.116 4.116 15 H 0.106 0.894 16 C -0.159 4.159 17 C -0.213 4.213 18 S -0.093 6.093 19 C -0.203 4.203 20 H 0.046 0.954 21 H 0.024 0.976 22 H 0.108 0.892 23 H 0.069 0.931 24 H 0.140 0.860 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.192 -1.398 13.779 14.022 hybrid contribution 0.172 -0.037 -1.396 1.407 sum 2.363 -1.435 12.384 12.689 Atomic orbital electron populations 1.22436 1.00703 0.99189 1.00550 1.19174 0.89605 0.94419 0.86492 0.94892 1.21161 1.30243 1.12425 0.89618 0.91961 1.24960 0.95349 0.95194 0.99076 1.69882 1.37322 1.23201 1.23355 0.86502 0.79234 0.79233 0.82442 1.20831 1.21370 1.19887 1.60871 1.58074 1.09070 1.03501 1.21995 0.98597 0.95683 0.90012 1.21710 0.98992 0.95089 0.95829 0.89382 1.22430 1.03115 0.99114 0.91223 1.24309 0.96285 1.00136 1.00546 1.87751 1.32815 1.71134 1.17592 1.24080 1.02219 1.01948 0.92022 0.95372 0.97602 0.89229 0.93062 0.85972 0.95861 0.91393 0.90027 0.90363 0.87982 0.89359 0.89160 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.94 37.16 0.33 -3.75 16 2 C 0.21 5.26 2.57 -68.86 -0.18 5.08 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.50 16 4 C -0.50 -13.68 8.84 -34.44 -0.30 -13.99 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.71 11.32 55.43 0.63 -25.08 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.69 -14.11 6.23 -107.95 -0.67 -14.78 16 13 C 0.07 1.16 4.49 -3.82 -0.02 1.14 16 14 C -0.10 -1.30 2.86 -90.28 -0.26 -1.56 16 15 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.12 -1.33 5.78 -25.62 -0.15 -1.48 16 17 C -0.06 -0.67 7.52 38.30 0.29 -0.38 16 18 S -0.32 -4.26 23.23 -107.50 -2.50 -6.76 16 19 C -0.05 -0.74 6.36 37.52 0.24 -0.50 16 20 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 21 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 22 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.32 6.31 7.17 -39.29 -0.28 6.03 16 25 H 0.02 0.41 7.40 -51.93 -0.38 0.03 16 26 H 0.07 1.20 8.02 -51.93 -0.42 0.78 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.91 7.84 -51.93 -0.41 0.50 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 1.42 6.98 -51.93 -0.36 1.06 16 LS Contribution 267.98 15.07 4.04 4.04 Total: -1.00 -28.48 267.98 -8.70 -37.18 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.04 Total: 2.97 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.14 Total: -14.01 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.05 Total: -39.86 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -2.50 Total: -6.76 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.48 -8.70 -37.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226403021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.808 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds