Wall clock time and date at job start Mon Mar 30 2020 20:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47552 * 2 1 4 4 C 1.50702 * 109.47215 * 240.00313 * 2 1 3 5 5 H 1.07992 * 120.00239 * 240.00222 * 4 2 1 6 6 C 1.37877 * 119.99794 * 60.00268 * 4 2 1 7 7 N 1.31517 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99944 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47463 * 89.99708 * 8 6 4 10 10 H 1.48499 * 109.47375 * 210.00030 * 8 6 4 11 11 H 1.48507 * 109.47096 * 329.99528 * 8 6 4 12 12 N 1.46897 * 109.46972 * 120.00591 * 2 1 3 13 13 C 1.47015 * 110.99783 * 176.36614 * 12 2 1 14 14 C 1.53103 * 109.25538 * 182.38968 * 13 12 2 15 15 O 1.43016 * 109.25809 * 303.14858 * 14 13 12 16 16 C 1.43103 * 113.76264 * 58.67404 * 15 14 13 17 17 H 1.09008 * 109.49771 * 61.25178 * 16 15 14 18 18 C 1.52997 * 109.56972 * 181.41583 * 16 15 14 19 19 O 1.42907 * 109.46713 * 294.75849 * 18 16 15 20 20 C 1.47016 * 110.99785 * 299.99542 * 12 2 1 21 21 H 1.09001 * 109.47561 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47157 * 300.00057 * 1 2 3 23 23 H 1.09008 * 109.46890 * 59.99503 * 1 2 3 24 24 H 0.96997 * 119.99874 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.50639 * 302.32307 * 13 12 2 26 26 H 1.08995 * 109.50980 * 62.45590 * 13 12 2 27 27 H 1.08998 * 109.50794 * 63.08655 * 14 13 12 28 28 H 1.09002 * 109.50553 * 183.16904 * 14 13 12 29 29 H 1.09001 * 109.46853 * 54.75104 * 18 16 15 30 30 H 1.08994 * 109.47462 * 174.75998 * 18 16 15 31 31 H 0.96698 * 113.99854 * 179.97438 * 19 18 16 32 32 H 1.09002 * 109.50934 * 297.54561 * 20 12 2 33 33 H 1.09003 * 109.50733 * 57.63155 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8299 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.3428 -2.1613 -4.4121 10 1 2.4867 -0.1410 -5.1123 11 1 3.6294 -1.7581 -3.7123 12 7 2.0196 -0.6926 1.1993 13 6 3.4866 -0.7880 1.1906 14 6 3.9493 -1.5668 2.4248 15 8 3.4557 -0.9219 3.6020 16 6 2.0295 -0.8121 3.6444 17 1 1.5875 -1.8085 3.6336 18 6 1.6096 -0.0798 4.9204 19 8 1.9561 -0.8705 6.0593 20 6 1.5482 -0.0260 2.4220 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5140 -0.8900 24 1 0.7088 1.1615 -3.4843 25 1 3.8122 -1.3074 0.2893 26 1 3.9166 0.2133 1.2098 27 1 3.5631 -2.5851 2.3786 28 1 5.0387 -1.5917 2.4522 29 1 2.1237 0.8798 4.9745 30 1 0.5323 0.0853 4.9069 31 1 1.7189 -0.4667 6.9053 32 1 1.9473 0.9876 2.4609 33 1 0.4589 0.0116 2.4192 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226791220.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:17 Heat of formation + Delta-G solvation = -88.649599 kcal Electronic energy + Delta-G solvation = -15242.504728 eV Core-core repulsion = 12689.484432 eV Total energy + Delta-G solvation = -2553.020296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.19025 -36.62033 -35.53206 -32.66815 -31.49758 -29.55790 -26.77800 -25.67198 -24.11971 -22.09992 -20.36129 -19.48614 -17.25177 -16.41966 -16.03879 -15.85903 -14.77176 -14.49741 -14.16678 -13.74188 -13.66150 -13.12303 -12.77042 -12.36318 -11.63067 -11.60917 -11.02985 -10.94065 -10.77801 -10.62608 -10.40824 -10.26957 -10.05011 -9.99866 -9.79208 -9.06707 -8.86159 -8.46214 -7.28845 -6.05584 -4.10668 3.28534 3.34955 3.37765 4.07542 4.16991 4.39831 4.93059 5.25869 5.27156 5.32583 5.52126 5.59245 5.68690 5.77817 5.88572 6.01681 6.05683 6.33414 6.53419 6.62652 6.78408 6.99778 7.06094 7.44206 7.56197 7.61732 7.69601 7.77320 8.11206 8.25237 8.51445 8.95014 9.54615 11.01316 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.054037 B = 0.007699 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.035253 B = 3635.916051 C = 4018.833796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.530 5.530 13 C 0.027 3.973 14 C 0.063 3.937 15 O -0.383 6.383 16 C 0.095 3.905 17 H 0.069 0.931 18 C 0.085 3.915 19 O -0.567 6.567 20 C 0.025 3.975 21 H 0.035 0.965 22 H 0.008 0.992 23 H 0.086 0.914 24 H 0.261 0.739 25 H 0.096 0.904 26 H 0.029 0.971 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.374 0.626 32 H 0.031 0.969 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 -1.027 10.951 11.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.017 0.983 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.256 5.256 13 C -0.101 4.101 14 C -0.014 4.014 15 O -0.302 6.302 16 C 0.037 3.963 17 H 0.086 0.914 18 C 0.007 3.993 19 O -0.371 6.371 20 C -0.104 4.104 21 H 0.054 0.946 22 H 0.027 0.973 23 H 0.105 0.895 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.220 0.780 32 H 0.049 0.951 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.232 -1.714 10.457 10.668 hybrid contribution 0.176 0.786 -0.756 1.104 sum 1.407 -0.929 9.702 9.847 Atomic orbital electron populations 1.21845 0.97571 0.99733 0.99962 1.19275 0.92421 0.92036 0.85619 0.98296 1.21127 1.31260 1.12333 0.89716 0.91835 1.24938 0.95155 0.95044 0.99070 1.69890 1.36831 1.22978 1.23506 0.86494 0.79230 0.79284 0.82376 1.20614 1.21300 1.19903 1.62354 1.08418 1.52654 1.02174 1.22639 0.89669 0.99192 0.98635 1.22736 0.98331 0.95875 0.84467 1.87940 1.20384 1.80346 1.41552 1.22123 0.82327 0.99304 0.92543 0.91353 1.22169 0.98268 0.93704 0.85162 1.86555 1.85788 1.48602 1.16167 1.22628 1.01149 0.95620 0.91049 0.94580 0.97340 0.89515 0.92917 0.88612 0.95263 0.92859 0.89304 0.93019 0.92155 0.77958 0.95107 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.74 37.16 0.32 -2.91 16 2 C 0.21 5.38 2.06 -68.87 -0.14 5.24 16 3 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 4 C -0.51 -13.76 7.90 -34.44 -0.27 -14.03 16 5 H 0.06 1.71 6.42 -52.49 -0.34 1.38 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.53 -11.66 4.59 -227.71 -1.04 -12.70 16 13 C 0.03 0.55 5.36 -3.71 -0.02 0.53 16 14 C 0.06 1.09 7.01 37.21 0.26 1.35 16 15 O -0.38 -7.11 10.44 -39.54 -0.41 -7.52 16 16 C 0.10 1.63 3.09 -26.68 -0.08 1.55 16 17 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16 18 C 0.09 1.15 6.72 37.16 0.25 1.40 16 19 O -0.57 -7.59 13.63 -39.54 -0.54 -8.12 16 20 C 0.02 0.46 4.62 -3.71 -0.02 0.45 16 21 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.01 0.17 6.35 -51.93 -0.33 -0.16 16 23 H 0.09 2.30 6.07 -51.92 -0.32 1.99 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.10 2.02 6.18 -51.93 -0.32 1.70 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.37 2.91 9.12 45.56 0.42 3.33 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.51 6.18 -51.93 -0.32 1.18 16 LS Contribution 263.54 15.07 3.97 3.97 Total: -1.00 -30.72 263.54 -6.36 -37.08 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.15 Total: 0.73 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 0.21 Total: -4.89 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.42 Total: -37.38 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.95 Total: -15.64 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.72 -6.36 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226791220.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.570 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds